Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02630

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02625 and ABZR87_RS02630 are separated by 72 nucleotidesABZR87_RS02630 and ABZR87_RS02635 are separated by 138 nucleotidesABZR87_RS02635 and ABZR87_RS02640 are separated by 64 nucleotides ABZR87_RS02625: ABZR87_RS02625 - penicillin-binding protein 1A, at 558,137 to 560,551 _RS02625 ABZR87_RS02630: ABZR87_RS02630 - iron donor protein CyaY, at 560,624 to 560,968 _RS02630 ABZR87_RS02635: ABZR87_RS02635 - lipoprotein, at 561,107 to 561,340 _RS02635 ABZR87_RS02640: ABZR87_RS02640 - diaminopimelate decarboxylase, at 561,405 to 562,664 _RS02640 Position (kb) 560 561Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 560.384 kb on + strandat 560.385 kb on - strandat 560.385 kb on - strandat 560.393 kb on + strandat 560.394 kb on - strandat 560.670 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.845 kb on + strand, within ABZR87_RS02630at 560.845 kb on + strand, within ABZR87_RS02630at 560.971 kb on + strandat 560.971 kb on + strandat 560.971 kb on + strandat 560.971 kb on + strandat 560.971 kb on + strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 561.047 kb on + strandat 561.373 kb on + strandat 561.374 kb on - strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.501 kb on + strandat 561.501 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.529 kb on - strandat 561.537 kb on + strand, within ABZR87_RS02640at 561.576 kb on + strand, within ABZR87_RS02640at 561.576 kb on + strand, within ABZR87_RS02640at 561.576 kb on + strand, within ABZR87_RS02640at 561.577 kb on - strand, within ABZR87_RS02640at 561.577 kb on - strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.952 kb on - strand, within ABZR87_RS02640

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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560,384 + -0.4
560,385 - -0.8
560,385 - -3.0
560,393 + -0.7
560,394 - -0.0
560,670 + ABZR87_RS02630 0.13 -1.0
560,688 + ABZR87_RS02630 0.19 +0.3
560,688 + ABZR87_RS02630 0.19 -2.4
560,688 + ABZR87_RS02630 0.19 +0.3
560,688 + ABZR87_RS02630 0.19 +0.5
560,688 + ABZR87_RS02630 0.19 -1.1
560,688 + ABZR87_RS02630 0.19 -1.6
560,688 + ABZR87_RS02630 0.19 +0.3
560,688 + ABZR87_RS02630 0.19 -1.2
560,688 + ABZR87_RS02630 0.19 -1.2
560,688 + ABZR87_RS02630 0.19 -1.3
560,688 + ABZR87_RS02630 0.19 +1.3
560,689 - ABZR87_RS02630 0.19 -0.5
560,689 - ABZR87_RS02630 0.19 +0.4
560,689 - ABZR87_RS02630 0.19 +0.9
560,689 - ABZR87_RS02630 0.19 +0.7
560,689 - ABZR87_RS02630 0.19 +0.8
560,689 - ABZR87_RS02630 0.19 -0.2
560,689 - ABZR87_RS02630 0.19 -0.1
560,689 - ABZR87_RS02630 0.19 -0.3
560,689 - ABZR87_RS02630 0.19 -0.7
560,689 - ABZR87_RS02630 0.19 -0.2
560,689 - ABZR87_RS02630 0.19 -0.1
560,689 - ABZR87_RS02630 0.19 -0.8
560,845 + ABZR87_RS02630 0.64 -0.5
560,845 + ABZR87_RS02630 0.64 +0.8
560,971 + -1.0
560,971 + -1.1
560,971 + +1.8
560,971 + +0.8
560,971 + -0.6
560,972 - +2.2
560,972 - -1.1
560,972 - -0.6
560,972 - -0.5
560,972 - +0.6
560,972 - -1.7
560,972 - +0.3
560,972 - +0.5
560,972 - +0.3
560,972 - -1.0
561,047 + +0.3
561,373 + -0.1
561,374 - -0.7
561,495 + -1.2
561,495 + -1.8
561,495 + -1.7
561,495 + -1.4
561,495 + -1.7
561,495 + -0.6
561,495 + -1.7
561,495 + -0.7
561,495 + -1.2
561,495 + -1.6
561,496 - +0.6
561,496 - -1.7
561,496 - -0.7
561,496 - -1.5
561,496 - -1.4
561,496 - -1.2
561,496 - +1.1
561,501 + -0.5
561,501 + +0.3
561,528 + -1.6
561,528 + -1.2
561,528 + -2.0
561,528 + -2.5
561,528 + -1.4
561,529 - -2.0
561,537 + ABZR87_RS02640 0.10 -0.5
561,576 + ABZR87_RS02640 0.14 -0.8
561,576 + ABZR87_RS02640 0.14 -2.0
561,576 + ABZR87_RS02640 0.14 -1.1
561,577 - ABZR87_RS02640 0.14 -1.2
561,577 - ABZR87_RS02640 0.14 -3.3
561,888 + ABZR87_RS02640 0.38 -1.6
561,888 + ABZR87_RS02640 0.38 +0.3
561,888 + ABZR87_RS02640 0.38 -2.0
561,888 + ABZR87_RS02640 0.38 +0.6
561,888 + ABZR87_RS02640 0.38 -1.4
561,888 + ABZR87_RS02640 0.38 -1.0
561,888 + ABZR87_RS02640 0.38 -0.2
561,888 + ABZR87_RS02640 0.38 -1.7
561,888 + ABZR87_RS02640 0.38 -0.6
561,888 + ABZR87_RS02640 0.38 -1.5
561,889 - ABZR87_RS02640 0.38 -1.9
561,889 - ABZR87_RS02640 0.38 -0.7
561,889 - ABZR87_RS02640 0.38 -1.5
561,889 - ABZR87_RS02640 0.38 -2.2
561,889 - ABZR87_RS02640 0.38 -1.4
561,889 - ABZR87_RS02640 0.38 -1.2
561,889 - ABZR87_RS02640 0.38 -1.3
561,952 - ABZR87_RS02640 0.43 -1.9

Or see this region's nucleotide sequence