Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02610 and ABZR87_RS02615 are separated by 2 nucleotides ABZR87_RS02615 and ABZR87_RS02620 are separated by 10 nucleotides ABZR87_RS02620 and ABZR87_RS02625 are separated by 452 nucleotides
ABZR87_RS02610: ABZR87_RS02610 - type 4a pilus biogenesis protein PilO, at 555,309 to 555,968
_RS02610
ABZR87_RS02615: ABZR87_RS02615 - PilN domain-containing protein, at 555,971 to 556,603
_RS02615
ABZR87_RS02620: ABZR87_RS02620 - type IV pilus biogenesis protein PilM, at 556,614 to 557,684
_RS02620
ABZR87_RS02625: ABZR87_RS02625 - penicillin-binding protein 1A, at 558,137 to 560,551
_RS02625
Position (kb) 556
557
558 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 555.729 kb on + strand, within ABZR87_RS02610 at 555.729 kb on + strand, within ABZR87_RS02610 at 555.729 kb on + strand, within ABZR87_RS02610 at 555.730 kb on - strand, within ABZR87_RS02610 at 555.752 kb on - strand, within ABZR87_RS02610 at 555.752 kb on - strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.818 kb on - strand, within ABZR87_RS02610 at 555.840 kb on + strand, within ABZR87_RS02610 at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 556.197 kb on + strand, within ABZR87_RS02615 at 556.198 kb on - strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.506 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.509 kb on - strand, within ABZR87_RS02615 at 556.509 kb on - strand, within ABZR87_RS02615 at 556.509 kb on - strand, within ABZR87_RS02615 at 556.523 kb on - strand, within ABZR87_RS02615 at 556.546 kb on - strand at 556.615 kb on + strand at 556.615 kb on + strand at 556.616 kb on - strand at 556.654 kb on + strand at 556.654 kb on + strand at 556.654 kb on + strand at 556.654 kb on + strand at 556.655 kb on - strand at 556.655 kb on - strand at 556.655 kb on - strand at 556.709 kb on + strand at 556.709 kb on + strand at 556.710 kb on - strand at 556.736 kb on + strand, within ABZR87_RS02620 at 556.737 kb on - strand, within ABZR87_RS02620 at 556.737 kb on - strand, within ABZR87_RS02620 at 556.737 kb on - strand, within ABZR87_RS02620 at 556.737 kb on - strand, within ABZR87_RS02620 at 556.994 kb on + strand, within ABZR87_RS02620 at 556.994 kb on + strand, within ABZR87_RS02620 at 556.994 kb on + strand, within ABZR87_RS02620 at 556.994 kb on + strand, within ABZR87_RS02620 at 556.995 kb on - strand, within ABZR87_RS02620 at 556.995 kb on - strand, within ABZR87_RS02620 at 556.995 kb on - strand, within ABZR87_RS02620 at 557.029 kb on + strand, within ABZR87_RS02620 at 557.030 kb on - strand, within ABZR87_RS02620 at 557.050 kb on + strand, within ABZR87_RS02620 at 557.051 kb on - strand, within ABZR87_RS02620 at 557.051 kb on - strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.520 kb on - strand, within ABZR87_RS02620 at 557.645 kb on + strand at 557.645 kb on + strand at 557.649 kb on + strand at 557.650 kb on - strand at 557.650 kb on - strand at 557.660 kb on + strand at 557.717 kb on + strand at 557.717 kb on + strand at 557.718 kb on - strand at 557.764 kb on + strand at 557.764 kb on + strand at 557.773 kb on + strand at 557.773 kb on + strand at 557.773 kb on + strand at 557.773 kb on + strand at 557.774 kb on - strand at 557.774 kb on - strand at 557.805 kb on + strand at 557.925 kb on + strand at 557.925 kb on + strand at 557.926 kb on - strand at 557.926 kb on - strand at 557.926 kb on - strand at 557.932 kb on - strand at 557.982 kb on + strand at 557.983 kb on - strand at 557.983 kb on - strand at 557.983 kb on - strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.046 kb on - strand at 558.046 kb on - strand at 558.046 kb on - strand at 558.046 kb on - strand at 558.055 kb on + strand at 558.055 kb on + strand at 558.055 kb on + strand at 558.055 kb on + strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.093 kb on - strand at 558.093 kb on - strand at 558.093 kb on - strand at 558.094 kb on + strand at 558.135 kb on + strand at 558.135 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 555,729 + ABZR87_RS02610 0.64 +2.5 555,729 + ABZR87_RS02610 0.64 +2.1 555,729 + ABZR87_RS02610 0.64 +1.7 555,730 - ABZR87_RS02610 0.64 +1.7 555,752 - ABZR87_RS02610 0.67 +2.3 555,752 - ABZR87_RS02610 0.67 +2.3 555,817 + ABZR87_RS02610 0.77 +2.4 555,817 + ABZR87_RS02610 0.77 +1.5 555,817 + ABZR87_RS02610 0.77 +1.2 555,817 + ABZR87_RS02610 0.77 +2.1 555,817 + ABZR87_RS02610 0.77 +3.0 555,817 + ABZR87_RS02610 0.77 +2.2 555,817 + ABZR87_RS02610 0.77 +2.2 555,818 - ABZR87_RS02610 0.77 +1.7 555,840 + ABZR87_RS02610 0.80 +1.3 555,972 + +1.9 555,972 + +3.0 555,972 + +1.8 555,972 + +2.0 555,972 + +1.8 555,972 + +1.8 555,972 + +1.7 555,972 + +1.5 555,973 - +0.5 555,973 - +0.1 555,973 - +0.4 555,973 - +0.8 555,973 - +0.1 555,973 - +0.0 555,973 - +0.5 555,973 - +0.4 555,973 - -0.0 556,197 + ABZR87_RS02615 0.36 +1.9 556,198 - ABZR87_RS02615 0.36 +1.8 556,230 + ABZR87_RS02615 0.41 +2.7 556,230 + ABZR87_RS02615 0.41 +2.0 556,230 + ABZR87_RS02615 0.41 +2.1 556,230 + ABZR87_RS02615 0.41 +1.7 556,230 + ABZR87_RS02615 0.41 +1.8 556,230 + ABZR87_RS02615 0.41 +1.5 556,230 + ABZR87_RS02615 0.41 +2.7 556,231 - ABZR87_RS02615 0.41 +1.5 556,231 - ABZR87_RS02615 0.41 +2.4 556,231 - ABZR87_RS02615 0.41 +1.6 556,231 - ABZR87_RS02615 0.41 +2.6 556,231 - ABZR87_RS02615 0.41 +1.9 556,231 - ABZR87_RS02615 0.41 +2.0 556,231 - ABZR87_RS02615 0.41 +2.2 556,506 + ABZR87_RS02615 0.85 +1.8 556,508 + ABZR87_RS02615 0.85 +1.4 556,508 + ABZR87_RS02615 0.85 +2.3 556,508 + ABZR87_RS02615 0.85 +2.6 556,508 + ABZR87_RS02615 0.85 +2.1 556,508 + ABZR87_RS02615 0.85 +2.3 556,508 + ABZR87_RS02615 0.85 +2.5 556,509 - ABZR87_RS02615 0.85 +2.1 556,509 - ABZR87_RS02615 0.85 +2.4 556,509 - ABZR87_RS02615 0.85 +2.9 556,523 - ABZR87_RS02615 0.87 +2.5 556,546 - +1.4 556,615 + +2.5 556,615 + +1.6 556,616 - +1.1 556,654 + +1.7 556,654 + +2.3 556,654 + +2.0 556,654 + +1.6 556,655 - +2.5 556,655 - +2.8 556,655 - +2.1 556,709 + +1.3 556,709 + +1.8 556,710 - +1.5 556,736 + ABZR87_RS02620 0.11 +3.2 556,737 - ABZR87_RS02620 0.11 +1.6 556,737 - ABZR87_RS02620 0.11 +2.3 556,737 - ABZR87_RS02620 0.11 +2.4 556,737 - ABZR87_RS02620 0.11 +1.0 556,994 + ABZR87_RS02620 0.35 +2.5 556,994 + ABZR87_RS02620 0.35 +2.2 556,994 + ABZR87_RS02620 0.35 +2.5 556,994 + ABZR87_RS02620 0.35 +2.7 556,995 - ABZR87_RS02620 0.36 +1.7 556,995 - ABZR87_RS02620 0.36 +1.7 556,995 - ABZR87_RS02620 0.36 +2.4 557,029 + ABZR87_RS02620 0.39 +1.7 557,030 - ABZR87_RS02620 0.39 +2.8 557,050 + ABZR87_RS02620 0.41 +2.3 557,051 - ABZR87_RS02620 0.41 +2.1 557,051 - ABZR87_RS02620 0.41 +1.9 557,314 + ABZR87_RS02620 0.65 +1.8 557,314 + ABZR87_RS02620 0.65 +2.7 557,314 + ABZR87_RS02620 0.65 +1.8 557,314 + ABZR87_RS02620 0.65 +2.1 557,314 + ABZR87_RS02620 0.65 +2.6 557,315 - ABZR87_RS02620 0.65 +1.7 557,315 - ABZR87_RS02620 0.65 +2.3 557,315 - ABZR87_RS02620 0.65 +1.1 557,315 - ABZR87_RS02620 0.65 +2.0 557,315 - ABZR87_RS02620 0.65 +2.2 557,520 - ABZR87_RS02620 0.85 +1.8 557,645 + +2.5 557,645 + +2.8 557,649 + +2.1 557,650 - +1.5 557,650 - +1.3 557,660 + +1.8 557,717 + +2.3 557,717 + +2.0 557,718 - +1.5 557,764 + +2.1 557,764 + +1.8 557,773 + +2.4 557,773 + +2.2 557,773 + +2.3 557,773 + +2.3 557,774 - -0.6 557,774 - -0.6 557,805 + +2.7 557,925 + +2.1 557,925 + +1.6 557,926 - -1.8 557,926 - -1.5 557,926 - +0.3 557,932 - -0.4 557,982 + +2.0 557,983 - -0.3 557,983 - -1.7 557,983 - -1.9 558,045 + +0.8 558,045 + +0.8 558,045 + +1.3 558,045 + +1.1 558,045 + +1.4 558,045 + +1.8 558,046 - -0.3 558,046 - -0.7 558,046 - -1.3 558,046 - -1.1 558,055 + +1.2 558,055 + +1.3 558,055 + +1.3 558,055 + +1.6 558,056 - -1.8 558,056 - -1.2 558,056 - -1.4 558,056 - -0.2 558,056 - -1.9 558,092 + +1.5 558,092 + +1.0 558,092 + +1.3 558,092 + +1.6 558,092 + -0.1 558,092 + +0.9 558,092 + +1.2 558,093 - -0.1 558,093 - -1.0 558,093 - +0.4 558,094 + -0.0 558,135 + +1.0 558,135 + +0.9
Or see this region's nucleotide sequence