Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02545 and ABZR87_RS02550 are separated by 37 nucleotides ABZR87_RS02550 and ABZR87_RS02555 overlap by 4 nucleotides ABZR87_RS02555 and ABZR87_RS02560 are separated by 228 nucleotides
ABZR87_RS02545: ABZR87_RS02545 - outer membrane lipid asymmetry maintenance protein MlaD, at 537,568 to 538,089
_RS02545
ABZR87_RS02550: ABZR87_RS02550 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 538,127 to 538,894
_RS02550
ABZR87_RS02555: ABZR87_RS02555 - ABC transporter ATP-binding protein, at 538,891 to 539,724
_RS02555
ABZR87_RS02560: ABZR87_RS02560 - tripartite tricarboxylate transporter substrate binding protein, at 539,953 to 540,984
_RS02560
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.971 kb on + strand, within ABZR87_RS02545 at 537.972 kb on - strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.042 kb on + strand at 538.043 kb on - strand at 538.083 kb on + strand at 538.084 kb on - strand at 538.084 kb on - strand at 538.084 kb on - strand at 538.242 kb on + strand, within ABZR87_RS02550 at 538.242 kb on + strand, within ABZR87_RS02550 at 538.243 kb on - strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.395 kb on + strand, within ABZR87_RS02550 at 538.395 kb on + strand, within ABZR87_RS02550 at 538.408 kb on + strand, within ABZR87_RS02550 at 538.666 kb on - strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.684 kb on - strand, within ABZR87_RS02550 at 538.949 kb on + strand at 538.950 kb on - strand at 538.950 kb on - strand at 539.069 kb on + strand, within ABZR87_RS02555 at 539.069 kb on + strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.214 kb on - strand, within ABZR87_RS02555 at 539.376 kb on + strand, within ABZR87_RS02555 at 539.376 kb on + strand, within ABZR87_RS02555 at 539.377 kb on - strand, within ABZR87_RS02555 at 539.474 kb on + strand, within ABZR87_RS02555 at 539.474 kb on + strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.670 kb on - strand at 539.764 kb on - strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.824 kb on - strand at 539.862 kb on + strand at 539.955 kb on - strand at 540.092 kb on - strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.119 kb on - strand, within ABZR87_RS02560 at 540.119 kb on - strand, within ABZR87_RS02560 at 540.119 kb on - strand, within ABZR87_RS02560 at 540.317 kb on + strand, within ABZR87_RS02560 at 540.410 kb on + strand, within ABZR87_RS02560 at 540.410 kb on + strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.608 kb on + strand, within ABZR87_RS02560 at 540.608 kb on + strand, within ABZR87_RS02560 at 540.609 kb on - strand, within ABZR87_RS02560 at 540.609 kb on - strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 537,971 + ABZR87_RS02545 0.77 -0.4 537,972 - ABZR87_RS02545 0.77 -1.1 537,999 + ABZR87_RS02545 0.83 -1.0 537,999 + ABZR87_RS02545 0.83 -1.2 537,999 + ABZR87_RS02545 0.83 +0.3 538,000 - ABZR87_RS02545 0.83 -0.6 538,000 - ABZR87_RS02545 0.83 -0.2 538,000 - ABZR87_RS02545 0.83 -1.3 538,000 - ABZR87_RS02545 0.83 -1.6 538,000 - ABZR87_RS02545 0.83 -3.1 538,000 - ABZR87_RS02545 0.83 -1.2 538,000 - ABZR87_RS02545 0.83 -1.3 538,000 - ABZR87_RS02545 0.83 -0.7 538,000 - ABZR87_RS02545 0.83 -1.3 538,000 - ABZR87_RS02545 0.83 -0.9 538,042 + +0.0 538,043 - -0.7 538,083 + -2.1 538,084 - -0.9 538,084 - +1.3 538,084 - -1.0 538,242 + ABZR87_RS02550 0.15 -1.1 538,242 + ABZR87_RS02550 0.15 -1.2 538,243 - ABZR87_RS02550 0.15 -2.2 538,251 + ABZR87_RS02550 0.16 -1.3 538,251 + ABZR87_RS02550 0.16 -3.6 538,251 + ABZR87_RS02550 0.16 +0.0 538,252 - ABZR87_RS02550 0.16 -0.9 538,252 - ABZR87_RS02550 0.16 +0.3 538,252 - ABZR87_RS02550 0.16 -3.3 538,395 + ABZR87_RS02550 0.35 -2.2 538,395 + ABZR87_RS02550 0.35 -0.9 538,408 + ABZR87_RS02550 0.37 +1.2 538,666 - ABZR87_RS02550 0.70 -2.4 538,683 + ABZR87_RS02550 0.72 -0.9 538,683 + ABZR87_RS02550 0.72 -1.6 538,683 + ABZR87_RS02550 0.72 -3.4 538,684 - ABZR87_RS02550 0.73 +0.3 538,949 + -3.1 538,950 - +0.8 538,950 - -1.2 539,069 + ABZR87_RS02555 0.21 +0.1 539,069 + ABZR87_RS02555 0.21 -2.2 539,070 - ABZR87_RS02555 0.21 -1.2 539,070 - ABZR87_RS02555 0.21 -0.2 539,070 - ABZR87_RS02555 0.21 -2.7 539,076 - ABZR87_RS02555 0.22 -2.0 539,076 - ABZR87_RS02555 0.22 -1.7 539,076 - ABZR87_RS02555 0.22 -1.6 539,076 - ABZR87_RS02555 0.22 -1.2 539,076 - ABZR87_RS02555 0.22 -1.3 539,076 - ABZR87_RS02555 0.22 -0.7 539,076 - ABZR87_RS02555 0.22 +0.2 539,076 - ABZR87_RS02555 0.22 -2.0 539,101 + ABZR87_RS02555 0.25 -1.0 539,101 + ABZR87_RS02555 0.25 -1.7 539,101 + ABZR87_RS02555 0.25 -0.7 539,102 - ABZR87_RS02555 0.25 -0.2 539,102 - ABZR87_RS02555 0.25 -2.1 539,102 - ABZR87_RS02555 0.25 -1.8 539,213 + ABZR87_RS02555 0.39 -1.9 539,213 + ABZR87_RS02555 0.39 +0.5 539,213 + ABZR87_RS02555 0.39 -0.3 539,213 + ABZR87_RS02555 0.39 -0.6 539,214 - ABZR87_RS02555 0.39 +1.2 539,376 + ABZR87_RS02555 0.58 -1.9 539,376 + ABZR87_RS02555 0.58 -0.5 539,377 - ABZR87_RS02555 0.58 -1.4 539,474 + ABZR87_RS02555 0.70 -0.5 539,474 + ABZR87_RS02555 0.70 -0.9 539,475 - ABZR87_RS02555 0.70 -0.8 539,475 - ABZR87_RS02555 0.70 -1.2 539,475 - ABZR87_RS02555 0.70 +0.4 539,475 - ABZR87_RS02555 0.70 -1.7 539,475 - ABZR87_RS02555 0.70 -1.5 539,475 - ABZR87_RS02555 0.70 -0.2 539,670 - -1.7 539,764 - -0.2 539,821 + -1.2 539,821 + +0.0 539,821 + +0.3 539,821 + +0.3 539,821 + -1.9 539,822 - -0.4 539,822 - -0.1 539,822 - -1.7 539,822 - +0.3 539,822 - -0.0 539,823 + +0.1 539,823 + -0.2 539,823 + -0.1 539,823 + +0.7 539,823 + +1.3 539,823 + -0.6 539,823 + -2.3 539,824 - -0.1 539,862 + +0.8 539,955 - -0.2 540,092 - ABZR87_RS02560 0.13 +1.8 540,118 + ABZR87_RS02560 0.16 +0.0 540,118 + ABZR87_RS02560 0.16 -1.2 540,118 + ABZR87_RS02560 0.16 -0.0 540,118 + ABZR87_RS02560 0.16 +1.4 540,118 + ABZR87_RS02560 0.16 +0.8 540,119 - ABZR87_RS02560 0.16 +0.1 540,119 - ABZR87_RS02560 0.16 +0.7 540,119 - ABZR87_RS02560 0.16 -0.0 540,317 + ABZR87_RS02560 0.35 -1.0 540,410 + ABZR87_RS02560 0.44 -1.6 540,410 + ABZR87_RS02560 0.44 -0.5 540,411 - ABZR87_RS02560 0.44 +0.3 540,411 - ABZR87_RS02560 0.44 -1.1 540,411 - ABZR87_RS02560 0.44 +0.2 540,608 + ABZR87_RS02560 0.63 +0.0 540,608 + ABZR87_RS02560 0.63 +0.7 540,609 - ABZR87_RS02560 0.64 -0.4 540,609 - ABZR87_RS02560 0.64 -0.3 540,666 + ABZR87_RS02560 0.69 -0.5 540,666 + ABZR87_RS02560 0.69 -1.5 540,666 + ABZR87_RS02560 0.69 -1.2 540,666 + ABZR87_RS02560 0.69 -0.7 540,666 + ABZR87_RS02560 0.69 +1.5 540,666 + ABZR87_RS02560 0.69 -0.1 540,666 + ABZR87_RS02560 0.69 -0.2 540,666 + ABZR87_RS02560 0.69 +0.5 540,666 + ABZR87_RS02560 0.69 -0.3 540,666 + ABZR87_RS02560 0.69 -0.9 540,666 + ABZR87_RS02560 0.69 -0.1 540,666 + ABZR87_RS02560 0.69 +0.3 540,666 + ABZR87_RS02560 0.69 +0.1 540,667 - ABZR87_RS02560 0.69 +1.8 540,667 - ABZR87_RS02560 0.69 +1.2 540,667 - ABZR87_RS02560 0.69 +1.8 540,667 - ABZR87_RS02560 0.69 +0.8 540,667 - ABZR87_RS02560 0.69 -0.2
Or see this region's nucleotide sequence