Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02475 and ABZR87_RS02480 are separated by 75 nucleotides ABZR87_RS02480 and ABZR87_RS02485 are separated by 8 nucleotides ABZR87_RS02485 and ABZR87_RS02490 are separated by 55 nucleotides ABZR87_RS02490 and ABZR87_RS02495 overlap by 4 nucleotides
ABZR87_RS02475: ABZR87_RS02475 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 526,003 to 526,746
_RS02475
ABZR87_RS02480: ABZR87_RS02480 - imidazole glycerol phosphate synthase subunit HisH, at 526,822 to 527,475
_RS02480
ABZR87_RS02485: ABZR87_RS02485 - MarC family protein, at 527,484 to 528,107
_RS02485
ABZR87_RS02490: ABZR87_RS02490 - imidazoleglycerol-phosphate dehydratase HisB, at 528,163 to 528,753
_RS02490
ABZR87_RS02495: ABZR87_RS02495 - histidinol-phosphate transaminase, at 528,750 to 529,874
_RS02495
Position (kb) 527
528
529 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 526.746 kb on + strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.906 kb on - strand, within ABZR87_RS02480 at 526.989 kb on - strand, within ABZR87_RS02480 at 526.995 kb on + strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 527.007 kb on - strand, within ABZR87_RS02480 at 527.007 kb on - strand, within ABZR87_RS02480 at 527.012 kb on + strand, within ABZR87_RS02480 at 527.013 kb on - strand, within ABZR87_RS02480 at 527.013 kb on - strand, within ABZR87_RS02480 at 527.013 kb on - strand, within ABZR87_RS02480 at 527.013 kb on - strand, within ABZR87_RS02480 at 527.175 kb on - strand, within ABZR87_RS02480 at 527.470 kb on - strand at 527.470 kb on - strand at 527.480 kb on + strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.485 kb on + strand at 527.486 kb on - strand at 527.486 kb on - strand at 527.486 kb on - strand at 527.486 kb on - strand at 527.486 kb on - strand at 527.497 kb on - strand at 527.905 kb on - strand, within ABZR87_RS02485 at 528.165 kb on - strand at 528.165 kb on - strand at 528.165 kb on - strand at 528.857 kb on + strand at 528.858 kb on - strand at 528.869 kb on + strand, within ABZR87_RS02495 at 528.870 kb on - strand, within ABZR87_RS02495 at 529.095 kb on - strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.097 kb on - strand, within ABZR87_RS02495
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 526,746 + +0.8 526,747 - +0.4 526,747 - +1.4 526,747 - -2.4 526,747 - +0.2 526,747 - +0.8 526,906 - ABZR87_RS02480 0.13 -0.5 526,989 - ABZR87_RS02480 0.26 +1.5 526,995 + ABZR87_RS02480 0.26 +0.7 526,996 - ABZR87_RS02480 0.27 -1.5 526,996 - ABZR87_RS02480 0.27 -1.2 526,996 - ABZR87_RS02480 0.27 -1.2 526,996 - ABZR87_RS02480 0.27 +0.0 526,996 - ABZR87_RS02480 0.27 +0.7 527,007 - ABZR87_RS02480 0.28 +1.1 527,007 - ABZR87_RS02480 0.28 -0.5 527,012 + ABZR87_RS02480 0.29 +3.4 527,013 - ABZR87_RS02480 0.29 +0.8 527,013 - ABZR87_RS02480 0.29 +1.8 527,013 - ABZR87_RS02480 0.29 +0.4 527,013 - ABZR87_RS02480 0.29 +1.4 527,175 - ABZR87_RS02480 0.54 +1.8 527,470 - -0.2 527,470 - -0.2 527,480 + +0.5 527,481 - -0.8 527,481 - -0.6 527,481 - -0.7 527,481 - -1.0 527,481 - +0.5 527,481 - +0.5 527,481 - -1.1 527,481 - +1.1 527,485 + -2.1 527,486 - -0.2 527,486 - -0.4 527,486 - -0.5 527,486 - -0.1 527,486 - -0.3 527,497 - +0.0 527,905 - ABZR87_RS02485 0.67 -1.3 528,165 - +0.3 528,165 - +1.3 528,165 - +0.1 528,857 + -0.2 528,858 - -0.6 528,869 + ABZR87_RS02495 0.11 +0.6 528,870 - ABZR87_RS02495 0.11 -0.6 529,095 - ABZR87_RS02495 0.31 -1.9 529,096 + ABZR87_RS02495 0.31 -0.9 529,096 + ABZR87_RS02495 0.31 -0.5 529,096 + ABZR87_RS02495 0.31 -0.3 529,096 + ABZR87_RS02495 0.31 -0.8 529,097 - ABZR87_RS02495 0.31 -0.8
Or see this region's nucleotide sequence