Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02435 and ABZR87_RS02440 are separated by 84 nucleotides ABZR87_RS02440 and ABZR87_RS02445 are separated by 61 nucleotides ABZR87_RS02445 and ABZR87_RS02450 are separated by 20 nucleotides ABZR87_RS02450 and ABZR87_RS02455 are separated by 62 nucleotides
ABZR87_RS02435: ABZR87_RS02435 - ABC transporter ATP-binding protein, at 521,108 to 522,193
_RS02435
ABZR87_RS02440: ABZR87_RS02440 - twin-arginine translocase subunit TatC, at 522,278 to 523,081
_RS02440
ABZR87_RS02445: ABZR87_RS02445 - Sec-independent protein translocase protein TatB, at 523,143 to 523,655
_RS02445
ABZR87_RS02450: ABZR87_RS02450 - Sec-independent protein translocase subunit TatA, at 523,676 to 523,924
_RS02450
ABZR87_RS02455: ABZR87_RS02455 - membrane protein, at 523,987 to 524,361
_RS02455
Position (kb)
522
523
524 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 521.287 kb on - strand, within ABZR87_RS02435 at 521.287 kb on - strand, within ABZR87_RS02435 at 521.375 kb on + strand, within ABZR87_RS02435 at 521.376 kb on - strand, within ABZR87_RS02435 at 521.376 kb on - strand, within ABZR87_RS02435 at 521.573 kb on + strand, within ABZR87_RS02435 at 521.573 kb on + strand, within ABZR87_RS02435 at 521.573 kb on + strand, within ABZR87_RS02435 at 521.573 kb on + strand, within ABZR87_RS02435 at 521.573 kb on + strand, within ABZR87_RS02435 at 521.573 kb on + strand, within ABZR87_RS02435 at 521.573 kb on + strand, within ABZR87_RS02435 at 521.573 kb on + strand, within ABZR87_RS02435 at 521.573 kb on + strand, within ABZR87_RS02435 at 521.574 kb on - strand, within ABZR87_RS02435 at 521.574 kb on - strand, within ABZR87_RS02435 at 521.574 kb on - strand, within ABZR87_RS02435 at 521.576 kb on - strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.789 kb on + strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 521.790 kb on - strand, within ABZR87_RS02435 at 522.041 kb on + strand, within ABZR87_RS02435 at 522.041 kb on + strand, within ABZR87_RS02435 at 522.041 kb on + strand, within ABZR87_RS02435 at 522.041 kb on + strand, within ABZR87_RS02435 at 522.042 kb on - strand, within ABZR87_RS02435 at 522.042 kb on - strand, within ABZR87_RS02435 at 522.042 kb on - strand, within ABZR87_RS02435 at 522.042 kb on - strand, within ABZR87_RS02435 at 522.042 kb on - strand, within ABZR87_RS02435 at 522.146 kb on + strand at 522.146 kb on + strand at 522.147 kb on - strand at 522.147 kb on - strand at 522.147 kb on - strand at 522.183 kb on - strand at 522.369 kb on + strand, within ABZR87_RS02440 at 522.369 kb on + strand, within ABZR87_RS02440 at 522.369 kb on + strand, within ABZR87_RS02440 at 522.369 kb on + strand, within ABZR87_RS02440 at 522.370 kb on - strand, within ABZR87_RS02440 at 522.370 kb on - strand, within ABZR87_RS02440 at 522.370 kb on - strand, within ABZR87_RS02440 at 522.370 kb on - strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.463 kb on - strand, within ABZR87_RS02440 at 522.463 kb on - strand, within ABZR87_RS02440 at 522.528 kb on - strand, within ABZR87_RS02440 at 522.528 kb on - strand, within ABZR87_RS02440 at 522.528 kb on - strand, within ABZR87_RS02440 at 522.528 kb on - strand, within ABZR87_RS02440 at 522.533 kb on + strand, within ABZR87_RS02440 at 522.534 kb on - strand, within ABZR87_RS02440 at 522.534 kb on - strand, within ABZR87_RS02440 at 522.585 kb on + strand, within ABZR87_RS02440 at 522.585 kb on + strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.630 kb on + strand, within ABZR87_RS02440 at 522.630 kb on + strand, within ABZR87_RS02440 at 522.630 kb on + strand, within ABZR87_RS02440 at 522.631 kb on - strand, within ABZR87_RS02440 at 522.631 kb on - strand, within ABZR87_RS02440 at 522.672 kb on + strand, within ABZR87_RS02440 at 522.673 kb on - strand, within ABZR87_RS02440 at 522.673 kb on - strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.706 kb on - strand, within ABZR87_RS02440 at 522.706 kb on - strand, within ABZR87_RS02440 at 522.706 kb on - strand, within ABZR87_RS02440 at 522.706 kb on - strand, within ABZR87_RS02440 at 522.750 kb on + strand, within ABZR87_RS02440 at 522.750 kb on + strand, within ABZR87_RS02440 at 522.751 kb on - strand, within ABZR87_RS02440 at 522.751 kb on - strand, within ABZR87_RS02440 at 522.751 kb on - strand, within ABZR87_RS02440 at 522.783 kb on + strand, within ABZR87_RS02440 at 522.783 kb on + strand, within ABZR87_RS02440 at 522.784 kb on - strand, within ABZR87_RS02440 at 522.942 kb on + strand, within ABZR87_RS02440 at 522.942 kb on + strand, within ABZR87_RS02440 at 523.295 kb on + strand, within ABZR87_RS02445 at 523.296 kb on - strand, within ABZR87_RS02445 at 523.531 kb on + strand, within ABZR87_RS02445 at 523.531 kb on + strand, within ABZR87_RS02445 at 523.531 kb on + strand, within ABZR87_RS02445 at 523.531 kb on + strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.913 kb on - strand at 523.929 kb on + strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.939 kb on + strand at 523.939 kb on + strand at 523.940 kb on - strand at 523.940 kb on - strand at 523.943 kb on + strand at 523.943 kb on + strand at 523.944 kb on - strand at 524.000 kb on + strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.024 kb on + strand at 524.025 kb on - strand, within ABZR87_RS02455 at 524.043 kb on + strand, within ABZR87_RS02455 at 524.043 kb on + strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.049 kb on - strand, within ABZR87_RS02455
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 521,287 - ABZR87_RS02435 0.16 -0.5 521,287 - ABZR87_RS02435 0.16 -0.5 521,375 + ABZR87_RS02435 0.25 +0.3 521,376 - ABZR87_RS02435 0.25 -0.6 521,376 - ABZR87_RS02435 0.25 +0.7 521,573 + ABZR87_RS02435 0.43 +0.4 521,573 + ABZR87_RS02435 0.43 +0.3 521,573 + ABZR87_RS02435 0.43 +0.0 521,573 + ABZR87_RS02435 0.43 +0.8 521,573 + ABZR87_RS02435 0.43 -0.2 521,573 + ABZR87_RS02435 0.43 -1.2 521,573 + ABZR87_RS02435 0.43 +0.5 521,573 + ABZR87_RS02435 0.43 -0.1 521,573 + ABZR87_RS02435 0.43 -1.7 521,574 - ABZR87_RS02435 0.43 -1.1 521,574 - ABZR87_RS02435 0.43 -0.4 521,574 - ABZR87_RS02435 0.43 -0.3 521,576 - ABZR87_RS02435 0.43 -0.9 521,789 + ABZR87_RS02435 0.63 +0.0 521,789 + ABZR87_RS02435 0.63 -0.1 521,789 + ABZR87_RS02435 0.63 -0.0 521,789 + ABZR87_RS02435 0.63 +0.7 521,789 + ABZR87_RS02435 0.63 +0.2 521,789 + ABZR87_RS02435 0.63 -0.4 521,789 + ABZR87_RS02435 0.63 -0.6 521,789 + ABZR87_RS02435 0.63 +0.6 521,789 + ABZR87_RS02435 0.63 +0.7 521,789 + ABZR87_RS02435 0.63 -0.2 521,789 + ABZR87_RS02435 0.63 +0.8 521,789 + ABZR87_RS02435 0.63 -0.5 521,789 + ABZR87_RS02435 0.63 -0.1 521,789 + ABZR87_RS02435 0.63 +0.6 521,789 + ABZR87_RS02435 0.63 +0.1 521,789 + ABZR87_RS02435 0.63 +0.6 521,789 + ABZR87_RS02435 0.63 -0.2 521,789 + ABZR87_RS02435 0.63 +0.3 521,789 + ABZR87_RS02435 0.63 -0.1 521,789 + ABZR87_RS02435 0.63 -0.2 521,789 + ABZR87_RS02435 0.63 -1.5 521,789 + ABZR87_RS02435 0.63 -0.6 521,789 + ABZR87_RS02435 0.63 +1.4 521,789 + ABZR87_RS02435 0.63 -0.8 521,789 + ABZR87_RS02435 0.63 -0.0 521,789 + ABZR87_RS02435 0.63 -0.7 521,789 + ABZR87_RS02435 0.63 +0.2 521,789 + ABZR87_RS02435 0.63 +0.0 521,789 + ABZR87_RS02435 0.63 -0.4 521,789 + ABZR87_RS02435 0.63 -0.0 521,790 - ABZR87_RS02435 0.63 +0.4 521,790 - ABZR87_RS02435 0.63 -0.8 521,790 - ABZR87_RS02435 0.63 -1.1 521,790 - ABZR87_RS02435 0.63 +0.5 521,790 - ABZR87_RS02435 0.63 -0.0 521,790 - ABZR87_RS02435 0.63 -0.4 521,790 - ABZR87_RS02435 0.63 +0.8 521,790 - ABZR87_RS02435 0.63 +0.8 521,790 - ABZR87_RS02435 0.63 +0.7 521,790 - ABZR87_RS02435 0.63 -0.1 521,790 - ABZR87_RS02435 0.63 -1.2 521,790 - ABZR87_RS02435 0.63 +0.1 521,790 - ABZR87_RS02435 0.63 -1.9 521,790 - ABZR87_RS02435 0.63 -0.4 521,790 - ABZR87_RS02435 0.63 -1.1 521,790 - ABZR87_RS02435 0.63 -2.1 521,790 - ABZR87_RS02435 0.63 +1.1 521,790 - ABZR87_RS02435 0.63 -0.5 521,790 - ABZR87_RS02435 0.63 -0.5 521,790 - ABZR87_RS02435 0.63 +0.2 521,790 - ABZR87_RS02435 0.63 +0.4 521,790 - ABZR87_RS02435 0.63 +0.9 521,790 - ABZR87_RS02435 0.63 -0.5 521,790 - ABZR87_RS02435 0.63 +0.3 521,790 - ABZR87_RS02435 0.63 -0.2 521,790 - ABZR87_RS02435 0.63 -0.4 521,790 - ABZR87_RS02435 0.63 +0.9 521,790 - ABZR87_RS02435 0.63 +0.7 521,790 - ABZR87_RS02435 0.63 +0.0 521,790 - ABZR87_RS02435 0.63 +0.2 521,790 - ABZR87_RS02435 0.63 -0.2 521,790 - ABZR87_RS02435 0.63 -0.4 522,041 + ABZR87_RS02435 0.86 -2.9 522,041 + ABZR87_RS02435 0.86 -0.2 522,041 + ABZR87_RS02435 0.86 -0.6 522,041 + ABZR87_RS02435 0.86 +0.3 522,042 - ABZR87_RS02435 0.86 +0.6 522,042 - ABZR87_RS02435 0.86 -0.3 522,042 - ABZR87_RS02435 0.86 +1.0 522,042 - ABZR87_RS02435 0.86 -0.3 522,042 - ABZR87_RS02435 0.86 +0.9 522,146 + -1.7 522,146 + +0.9 522,147 - -0.9 522,147 - -0.0 522,147 - +1.0 522,183 - +0.3 522,369 + ABZR87_RS02440 0.11 -2.0 522,369 + ABZR87_RS02440 0.11 +0.3 522,369 + ABZR87_RS02440 0.11 -2.5 522,369 + ABZR87_RS02440 0.11 -1.5 522,370 - ABZR87_RS02440 0.11 -2.3 522,370 - ABZR87_RS02440 0.11 -1.8 522,370 - ABZR87_RS02440 0.11 -0.4 522,370 - ABZR87_RS02440 0.11 -1.4 522,462 + ABZR87_RS02440 0.23 -1.9 522,462 + ABZR87_RS02440 0.23 -0.4 522,462 + ABZR87_RS02440 0.23 +0.8 522,462 + ABZR87_RS02440 0.23 -0.7 522,462 + ABZR87_RS02440 0.23 -1.7 522,463 - ABZR87_RS02440 0.23 -0.5 522,463 - ABZR87_RS02440 0.23 -0.3 522,528 - ABZR87_RS02440 0.31 -1.7 522,528 - ABZR87_RS02440 0.31 -0.3 522,528 - ABZR87_RS02440 0.31 -1.6 522,528 - ABZR87_RS02440 0.31 +0.2 522,533 + ABZR87_RS02440 0.32 -2.7 522,534 - ABZR87_RS02440 0.32 +0.8 522,534 - ABZR87_RS02440 0.32 -0.3 522,585 + ABZR87_RS02440 0.38 -0.2 522,585 + ABZR87_RS02440 0.38 -0.7 522,586 - ABZR87_RS02440 0.38 -0.9 522,586 - ABZR87_RS02440 0.38 -1.6 522,586 - ABZR87_RS02440 0.38 +0.2 522,586 - ABZR87_RS02440 0.38 -1.9 522,586 - ABZR87_RS02440 0.38 -1.4 522,586 - ABZR87_RS02440 0.38 -0.9 522,630 + ABZR87_RS02440 0.44 -1.9 522,630 + ABZR87_RS02440 0.44 -0.8 522,630 + ABZR87_RS02440 0.44 -1.5 522,631 - ABZR87_RS02440 0.44 +0.4 522,631 - ABZR87_RS02440 0.44 -3.7 522,672 + ABZR87_RS02440 0.49 -3.0 522,673 - ABZR87_RS02440 0.49 -0.4 522,673 - ABZR87_RS02440 0.49 -1.3 522,705 + ABZR87_RS02440 0.53 -1.1 522,705 + ABZR87_RS02440 0.53 -0.7 522,705 + ABZR87_RS02440 0.53 -1.6 522,705 + ABZR87_RS02440 0.53 -2.1 522,705 + ABZR87_RS02440 0.53 -0.9 522,705 + ABZR87_RS02440 0.53 -1.3 522,705 + ABZR87_RS02440 0.53 -0.3 522,705 + ABZR87_RS02440 0.53 -1.6 522,705 + ABZR87_RS02440 0.53 -1.1 522,705 + ABZR87_RS02440 0.53 +0.3 522,706 - ABZR87_RS02440 0.53 -1.3 522,706 - ABZR87_RS02440 0.53 +0.8 522,706 - ABZR87_RS02440 0.53 -0.3 522,706 - ABZR87_RS02440 0.53 -1.2 522,750 + ABZR87_RS02440 0.59 -0.5 522,750 + ABZR87_RS02440 0.59 -1.7 522,751 - ABZR87_RS02440 0.59 -1.6 522,751 - ABZR87_RS02440 0.59 -3.1 522,751 - ABZR87_RS02440 0.59 -1.8 522,783 + ABZR87_RS02440 0.63 -0.2 522,783 + ABZR87_RS02440 0.63 -0.2 522,784 - ABZR87_RS02440 0.63 -0.4 522,942 + ABZR87_RS02440 0.83 -0.3 522,942 + ABZR87_RS02440 0.83 -1.0 523,295 + ABZR87_RS02445 0.30 -0.3 523,296 - ABZR87_RS02445 0.30 -0.9 523,531 + ABZR87_RS02445 0.76 -2.6 523,531 + ABZR87_RS02445 0.76 -0.9 523,531 + ABZR87_RS02445 0.76 -1.8 523,531 + ABZR87_RS02445 0.76 +1.8 523,532 - ABZR87_RS02445 0.76 -2.4 523,532 - ABZR87_RS02445 0.76 -0.6 523,532 - ABZR87_RS02445 0.76 -0.7 523,532 - ABZR87_RS02445 0.76 -2.8 523,532 - ABZR87_RS02445 0.76 -0.9 523,532 - ABZR87_RS02445 0.76 -1.8 523,913 - -1.9 523,929 + -0.6 523,930 - -1.6 523,930 - +0.4 523,930 - -1.0 523,930 - -1.5 523,930 - -0.3 523,930 - -1.2 523,939 + -1.1 523,939 + -0.3 523,940 - +0.4 523,940 - -0.1 523,943 + -1.3 523,943 + +0.8 523,944 - -0.1 524,000 + -1.9 524,001 - +0.3 524,001 - -0.9 524,001 - +0.0 524,001 - +0.2 524,001 - +0.7 524,024 + -0.1 524,025 - ABZR87_RS02455 0.10 -0.0 524,043 + ABZR87_RS02455 0.15 -1.1 524,043 + ABZR87_RS02455 0.15 -0.0 524,044 - ABZR87_RS02455 0.15 +0.1 524,044 - ABZR87_RS02455 0.15 +1.0 524,044 - ABZR87_RS02455 0.15 +0.2 524,044 - ABZR87_RS02455 0.15 -0.6 524,048 + ABZR87_RS02455 0.16 -1.3 524,048 + ABZR87_RS02455 0.16 -0.7 524,048 + ABZR87_RS02455 0.16 -1.6 524,048 + ABZR87_RS02455 0.16 -1.0 524,049 - ABZR87_RS02455 0.17 -0.2
Or see this region's nucleotide sequence