Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02340 and ABZR87_RS02345 are separated by 31 nucleotides ABZR87_RS02345 and ABZR87_RS02350 are separated by 224 nucleotides ABZR87_RS02350 and ABZR87_RS02355 are separated by 572 nucleotides ABZR87_RS02355 and ABZR87_RS02360 are separated by 73 nucleotides ABZR87_RS02360 and ABZR87_RS02365 are separated by 29 nucleotides
ABZR87_RS02340: ABZR87_RS02340 - Nramp family divalent metal transporter, at 501,383 to 503,026
_RS02340
ABZR87_RS02345: ABZR87_RS02345 - hypothetical protein, at 503,058 to 503,264
_RS02345
ABZR87_RS02350: ABZR87_RS02350 - carbohydrate porin, at 503,489 to 504,883
_RS02350
ABZR87_RS02355: ABZR87_RS02355 - hypothetical protein, at 505,456 to 505,680
_RS02355
ABZR87_RS02360: ABZR87_RS02360 - tRNA-Thr, at 505,754 to 505,829
_RS02360
ABZR87_RS02365: ABZR87_RS02365 - ClpXP protease specificity-enhancing factor, at 505,859 to 506,356
_RS02365
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 502.566 kb on + strand, within ABZR87_RS02340 at 502.567 kb on - strand, within ABZR87_RS02340 at 502.567 kb on - strand, within ABZR87_RS02340 at 502.660 kb on + strand, within ABZR87_RS02340 at 502.660 kb on + strand, within ABZR87_RS02340 at 502.661 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.788 kb on + strand, within ABZR87_RS02340 at 502.789 kb on - strand, within ABZR87_RS02340 at 502.809 kb on + strand, within ABZR87_RS02340 at 502.809 kb on + strand, within ABZR87_RS02340 at 502.809 kb on + strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.813 kb on + strand, within ABZR87_RS02340 at 502.813 kb on + strand, within ABZR87_RS02340 at 502.814 kb on - strand, within ABZR87_RS02340 at 503.016 kb on - strand at 503.059 kb on + strand at 503.059 kb on + strand at 503.059 kb on + strand at 503.059 kb on + strand at 503.060 kb on - strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.066 kb on - strand at 503.066 kb on - strand at 503.098 kb on + strand, within ABZR87_RS02345 at 503.099 kb on - strand, within ABZR87_RS02345 at 503.429 kb on + strand at 503.451 kb on - strand at 503.472 kb on + strand at 503.472 kb on + strand at 503.472 kb on + strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.484 kb on + strand at 503.484 kb on + strand at 503.485 kb on - strand at 503.491 kb on - strand at 503.491 kb on - strand at 503.491 kb on - strand at 503.511 kb on - strand at 503.547 kb on + strand at 503.547 kb on + strand at 503.563 kb on + strand at 503.564 kb on - strand at 503.613 kb on + strand at 503.613 kb on + strand at 503.614 kb on - strand at 503.614 kb on - strand at 503.614 kb on - strand at 503.614 kb on - strand at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.694 kb on + strand, within ABZR87_RS02350 at 503.695 kb on - strand, within ABZR87_RS02350 at 503.695 kb on - strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.824 kb on - strand, within ABZR87_RS02350 at 504.060 kb on + strand, within ABZR87_RS02350 at 504.061 kb on - strand, within ABZR87_RS02350 at 504.061 kb on - strand, within ABZR87_RS02350 at 504.091 kb on - strand, within ABZR87_RS02350 at 504.189 kb on + strand, within ABZR87_RS02350 at 504.190 kb on - strand, within ABZR87_RS02350 at 504.213 kb on + strand, within ABZR87_RS02350 at 504.213 kb on + strand, within ABZR87_RS02350 at 504.213 kb on + strand, within ABZR87_RS02350 at 504.213 kb on + strand, within ABZR87_RS02350 at 504.214 kb on - strand, within ABZR87_RS02350 at 504.214 kb on - strand, within ABZR87_RS02350 at 504.214 kb on - strand, within ABZR87_RS02350 at 504.214 kb on - strand, within ABZR87_RS02350 at 504.234 kb on + strand, within ABZR87_RS02350 at 504.297 kb on + strand, within ABZR87_RS02350 at 504.297 kb on + strand, within ABZR87_RS02350 at 504.297 kb on + strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.298 kb on - strand, within ABZR87_RS02350 at 504.350 kb on + strand, within ABZR87_RS02350 at 504.350 kb on + strand, within ABZR87_RS02350 at 504.351 kb on - strand, within ABZR87_RS02350 at 504.584 kb on + strand, within ABZR87_RS02350 at 504.585 kb on - strand, within ABZR87_RS02350 at 504.596 kb on + strand, within ABZR87_RS02350 at 504.596 kb on + strand, within ABZR87_RS02350 at 504.621 kb on + strand, within ABZR87_RS02350 at 504.621 kb on + strand, within ABZR87_RS02350 at 504.621 kb on + strand, within ABZR87_RS02350 at 504.622 kb on - strand, within ABZR87_RS02350 at 504.622 kb on - strand, within ABZR87_RS02350 at 504.622 kb on - strand, within ABZR87_RS02350 at 504.663 kb on + strand, within ABZR87_RS02350 at 504.663 kb on + strand, within ABZR87_RS02350 at 504.663 kb on + strand, within ABZR87_RS02350 at 504.664 kb on - strand, within ABZR87_RS02350 at 504.664 kb on - strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.699 kb on + strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.700 kb on - strand, within ABZR87_RS02350 at 504.858 kb on + strand at 504.858 kb on + strand at 504.858 kb on + strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.916 kb on + strand at 504.916 kb on + strand at 504.917 kb on - strand at 504.983 kb on + strand at 504.984 kb on - strand at 504.984 kb on - strand at 504.984 kb on - strand at 505.010 kb on + strand at 505.010 kb on + strand at 505.010 kb on + strand at 505.010 kb on + strand at 505.011 kb on - strand at 505.011 kb on - strand at 505.052 kb on - strand at 505.098 kb on + strand at 505.128 kb on + strand at 505.129 kb on - strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.159 kb on - strand at 505.162 kb on + strand at 505.162 kb on + strand at 505.162 kb on + strand at 505.163 kb on - strand at 505.163 kb on - strand at 505.179 kb on + strand at 505.180 kb on - strand at 505.180 kb on - strand at 505.285 kb on - strand at 505.334 kb on + strand at 505.350 kb on + strand at 505.350 kb on + strand at 505.351 kb on - strand at 505.351 kb on - strand at 505.616 kb on - strand, within ABZR87_RS02355 at 505.846 kb on - strand at 505.851 kb on - strand at 505.861 kb on - strand at 505.861 kb on - strand at 505.874 kb on + strand at 505.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 502,566 + ABZR87_RS02340 0.72 -0.1 502,567 - ABZR87_RS02340 0.72 -0.6 502,567 - ABZR87_RS02340 0.72 +0.2 502,660 + ABZR87_RS02340 0.78 +1.8 502,660 + ABZR87_RS02340 0.78 +0.0 502,661 - ABZR87_RS02340 0.78 -1.6 502,741 - ABZR87_RS02340 0.83 +0.1 502,741 - ABZR87_RS02340 0.83 +0.7 502,741 - ABZR87_RS02340 0.83 -0.3 502,741 - ABZR87_RS02340 0.83 +0.7 502,741 - ABZR87_RS02340 0.83 -0.1 502,775 + ABZR87_RS02340 0.85 -0.2 502,775 + ABZR87_RS02340 0.85 -0.2 502,775 + ABZR87_RS02340 0.85 -2.2 502,775 + ABZR87_RS02340 0.85 +0.8 502,776 - ABZR87_RS02340 0.85 -0.1 502,776 - ABZR87_RS02340 0.85 +0.1 502,776 - ABZR87_RS02340 0.85 -1.7 502,776 - ABZR87_RS02340 0.85 -0.5 502,788 + ABZR87_RS02340 0.85 -0.5 502,789 - ABZR87_RS02340 0.86 -0.4 502,809 + ABZR87_RS02340 0.87 +0.3 502,809 + ABZR87_RS02340 0.87 +0.2 502,809 + ABZR87_RS02340 0.87 -0.1 502,810 - ABZR87_RS02340 0.87 -0.5 502,810 - ABZR87_RS02340 0.87 +0.5 502,810 - ABZR87_RS02340 0.87 +1.5 502,810 - ABZR87_RS02340 0.87 +0.5 502,810 - ABZR87_RS02340 0.87 +0.3 502,813 + ABZR87_RS02340 0.87 -0.3 502,813 + ABZR87_RS02340 0.87 +0.2 502,814 - ABZR87_RS02340 0.87 -1.5 503,016 - -0.0 503,059 + +0.3 503,059 + +1.2 503,059 + +0.3 503,059 + -0.0 503,060 - -0.5 503,065 + +0.9 503,065 + +0.4 503,065 + -1.6 503,065 + +0.5 503,065 + +0.6 503,066 - -0.2 503,066 - -1.0 503,098 + ABZR87_RS02345 0.19 -0.3 503,099 - ABZR87_RS02345 0.20 -1.1 503,429 + -0.6 503,451 - +0.2 503,472 + -0.5 503,472 + +0.8 503,472 + -0.1 503,473 - -0.2 503,473 - +0.0 503,473 - -0.2 503,473 - -0.3 503,484 + -0.4 503,484 + +0.6 503,485 - -0.5 503,491 - -0.4 503,491 - +0.8 503,491 - -0.2 503,511 - -0.6 503,547 + -0.4 503,547 + -1.9 503,563 + +0.8 503,564 - -1.1 503,613 + -1.3 503,613 + +0.3 503,614 - +0.4 503,614 - +0.7 503,614 - -0.0 503,614 - +1.3 503,643 + ABZR87_RS02350 0.11 +0.0 503,643 + ABZR87_RS02350 0.11 +0.1 503,643 + ABZR87_RS02350 0.11 -0.9 503,643 + ABZR87_RS02350 0.11 +0.4 503,643 + ABZR87_RS02350 0.11 -1.2 503,694 + ABZR87_RS02350 0.15 +0.1 503,695 - ABZR87_RS02350 0.15 -0.1 503,695 - ABZR87_RS02350 0.15 -0.0 503,823 + ABZR87_RS02350 0.24 +1.8 503,823 + ABZR87_RS02350 0.24 -0.7 503,823 + ABZR87_RS02350 0.24 +0.8 503,823 + ABZR87_RS02350 0.24 +0.7 503,824 - ABZR87_RS02350 0.24 +0.4 504,060 + ABZR87_RS02350 0.41 +0.2 504,061 - ABZR87_RS02350 0.41 +0.7 504,061 - ABZR87_RS02350 0.41 +0.3 504,091 - ABZR87_RS02350 0.43 -1.4 504,189 + ABZR87_RS02350 0.50 +0.8 504,190 - ABZR87_RS02350 0.50 +0.5 504,213 + ABZR87_RS02350 0.52 +0.4 504,213 + ABZR87_RS02350 0.52 +0.3 504,213 + ABZR87_RS02350 0.52 -0.5 504,213 + ABZR87_RS02350 0.52 -0.8 504,214 - ABZR87_RS02350 0.52 +0.5 504,214 - ABZR87_RS02350 0.52 +0.9 504,214 - ABZR87_RS02350 0.52 +0.5 504,214 - ABZR87_RS02350 0.52 -0.7 504,234 + ABZR87_RS02350 0.53 -0.7 504,297 + ABZR87_RS02350 0.58 -0.1 504,297 + ABZR87_RS02350 0.58 -0.4 504,297 + ABZR87_RS02350 0.58 -0.2 504,298 - ABZR87_RS02350 0.58 -1.1 504,298 - ABZR87_RS02350 0.58 -1.0 504,298 - ABZR87_RS02350 0.58 +1.0 504,298 - ABZR87_RS02350 0.58 +0.9 504,298 - ABZR87_RS02350 0.58 -0.2 504,298 - ABZR87_RS02350 0.58 -0.3 504,350 + ABZR87_RS02350 0.62 -1.5 504,350 + ABZR87_RS02350 0.62 +0.1 504,351 - ABZR87_RS02350 0.62 -0.9 504,584 + ABZR87_RS02350 0.78 +0.0 504,585 - ABZR87_RS02350 0.79 +0.1 504,596 + ABZR87_RS02350 0.79 +0.6 504,596 + ABZR87_RS02350 0.79 +0.2 504,621 + ABZR87_RS02350 0.81 -2.9 504,621 + ABZR87_RS02350 0.81 +0.8 504,621 + ABZR87_RS02350 0.81 +0.9 504,622 - ABZR87_RS02350 0.81 -0.3 504,622 - ABZR87_RS02350 0.81 -0.9 504,622 - ABZR87_RS02350 0.81 +1.1 504,663 + ABZR87_RS02350 0.84 -1.5 504,663 + ABZR87_RS02350 0.84 +0.3 504,663 + ABZR87_RS02350 0.84 -0.7 504,664 - ABZR87_RS02350 0.84 -1.0 504,664 - ABZR87_RS02350 0.84 +0.6 504,699 + ABZR87_RS02350 0.87 +1.0 504,699 + ABZR87_RS02350 0.87 -0.2 504,699 + ABZR87_RS02350 0.87 -0.4 504,699 + ABZR87_RS02350 0.87 +1.2 504,699 + ABZR87_RS02350 0.87 +1.2 504,699 + ABZR87_RS02350 0.87 -0.2 504,699 + ABZR87_RS02350 0.87 -0.2 504,699 + ABZR87_RS02350 0.87 -0.6 504,699 + ABZR87_RS02350 0.87 -1.2 504,699 + ABZR87_RS02350 0.87 +0.8 504,699 + ABZR87_RS02350 0.87 -0.3 504,699 + ABZR87_RS02350 0.87 +0.0 504,699 + ABZR87_RS02350 0.87 -0.0 504,699 + ABZR87_RS02350 0.87 -0.4 504,699 + ABZR87_RS02350 0.87 +0.7 504,700 - ABZR87_RS02350 0.87 +1.8 504,700 - ABZR87_RS02350 0.87 -0.6 504,700 - ABZR87_RS02350 0.87 +0.0 504,700 - ABZR87_RS02350 0.87 -0.2 504,700 - ABZR87_RS02350 0.87 -0.7 504,700 - ABZR87_RS02350 0.87 +0.6 504,700 - ABZR87_RS02350 0.87 -0.1 504,700 - ABZR87_RS02350 0.87 -0.3 504,700 - ABZR87_RS02350 0.87 +0.3 504,700 - ABZR87_RS02350 0.87 +0.2 504,700 - ABZR87_RS02350 0.87 +0.1 504,700 - ABZR87_RS02350 0.87 -0.3 504,700 - ABZR87_RS02350 0.87 +0.5 504,700 - ABZR87_RS02350 0.87 -1.1 504,858 + +0.7 504,858 + -0.5 504,858 + -0.1 504,859 - -1.9 504,859 - +0.6 504,859 - +0.3 504,859 - +1.1 504,859 - +0.4 504,859 - -0.6 504,916 + +1.0 504,916 + +0.1 504,917 - +0.3 504,983 + +2.2 504,984 - +0.3 504,984 - -0.4 504,984 - -0.3 505,010 + -0.7 505,010 + +0.3 505,010 + +0.1 505,010 + +1.8 505,011 - +0.7 505,011 - -0.2 505,052 - -0.2 505,098 + +3.8 505,128 + +1.3 505,129 - -0.9 505,158 + +0.0 505,158 + +1.8 505,158 + +2.5 505,158 + +0.9 505,158 + +0.0 505,159 - +0.3 505,162 + +0.0 505,162 + +0.2 505,162 + +0.5 505,163 - +0.3 505,163 - +0.4 505,179 + -2.6 505,180 - +0.4 505,180 - +0.4 505,285 - -0.7 505,334 + -0.5 505,350 + -0.8 505,350 + -0.4 505,351 - +0.3 505,351 - -0.4 505,616 - ABZR87_RS02355 0.71 -0.7 505,846 - +1.0 505,851 - -0.2 505,861 - +0.4 505,861 - -0.7 505,874 + -0.6 505,875 - -0.4
Or see this region's nucleotide sequence