Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02345

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02340 and ABZR87_RS02345 are separated by 31 nucleotidesABZR87_RS02345 and ABZR87_RS02350 are separated by 224 nucleotides ABZR87_RS02340: ABZR87_RS02340 - Nramp family divalent metal transporter, at 501,383 to 503,026 _RS02340 ABZR87_RS02345: ABZR87_RS02345 - hypothetical protein, at 503,058 to 503,264 _RS02345 ABZR87_RS02350: ABZR87_RS02350 - carbohydrate porin, at 503,489 to 504,883 _RS02350 Position (kb) 503 504Strain fitness (log2 ratio) -2 -1 0 1 2at 502.128 kb on + strand, within ABZR87_RS02340at 502.128 kb on + strand, within ABZR87_RS02340at 502.128 kb on + strand, within ABZR87_RS02340at 502.128 kb on + strand, within ABZR87_RS02340at 502.128 kb on + strand, within ABZR87_RS02340at 502.129 kb on - strand, within ABZR87_RS02340at 502.129 kb on - strand, within ABZR87_RS02340at 502.129 kb on - strand, within ABZR87_RS02340at 502.129 kb on - strand, within ABZR87_RS02340at 502.275 kb on + strand, within ABZR87_RS02340at 502.275 kb on + strand, within ABZR87_RS02340at 502.275 kb on + strand, within ABZR87_RS02340at 502.276 kb on - strand, within ABZR87_RS02340at 502.276 kb on - strand, within ABZR87_RS02340at 502.276 kb on - strand, within ABZR87_RS02340at 502.566 kb on + strand, within ABZR87_RS02340at 502.567 kb on - strand, within ABZR87_RS02340at 502.567 kb on - strand, within ABZR87_RS02340at 502.660 kb on + strand, within ABZR87_RS02340at 502.660 kb on + strand, within ABZR87_RS02340at 502.661 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.775 kb on + strand, within ABZR87_RS02340at 502.775 kb on + strand, within ABZR87_RS02340at 502.775 kb on + strand, within ABZR87_RS02340at 502.775 kb on + strand, within ABZR87_RS02340at 502.776 kb on - strand, within ABZR87_RS02340at 502.776 kb on - strand, within ABZR87_RS02340at 502.776 kb on - strand, within ABZR87_RS02340at 502.776 kb on - strand, within ABZR87_RS02340at 502.788 kb on + strand, within ABZR87_RS02340at 502.789 kb on - strand, within ABZR87_RS02340at 502.809 kb on + strand, within ABZR87_RS02340at 502.809 kb on + strand, within ABZR87_RS02340at 502.809 kb on + strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.813 kb on + strand, within ABZR87_RS02340at 502.813 kb on + strand, within ABZR87_RS02340at 502.814 kb on - strand, within ABZR87_RS02340at 503.016 kb on - strandat 503.059 kb on + strandat 503.059 kb on + strandat 503.059 kb on + strandat 503.059 kb on + strandat 503.060 kb on - strandat 503.065 kb on + strandat 503.065 kb on + strandat 503.065 kb on + strandat 503.065 kb on + strandat 503.065 kb on + strandat 503.066 kb on - strandat 503.066 kb on - strandat 503.098 kb on + strand, within ABZR87_RS02345at 503.099 kb on - strand, within ABZR87_RS02345at 503.429 kb on + strandat 503.451 kb on - strandat 503.472 kb on + strandat 503.472 kb on + strandat 503.472 kb on + strandat 503.473 kb on - strandat 503.473 kb on - strandat 503.473 kb on - strandat 503.473 kb on - strandat 503.484 kb on + strandat 503.484 kb on + strandat 503.485 kb on - strandat 503.491 kb on - strandat 503.491 kb on - strandat 503.491 kb on - strandat 503.511 kb on - strandat 503.547 kb on + strandat 503.547 kb on + strandat 503.563 kb on + strandat 503.564 kb on - strandat 503.613 kb on + strandat 503.613 kb on + strandat 503.614 kb on - strandat 503.614 kb on - strandat 503.614 kb on - strandat 503.614 kb on - strandat 503.643 kb on + strand, within ABZR87_RS02350at 503.643 kb on + strand, within ABZR87_RS02350at 503.643 kb on + strand, within ABZR87_RS02350at 503.643 kb on + strand, within ABZR87_RS02350at 503.643 kb on + strand, within ABZR87_RS02350at 503.694 kb on + strand, within ABZR87_RS02350at 503.695 kb on - strand, within ABZR87_RS02350at 503.695 kb on - strand, within ABZR87_RS02350at 503.823 kb on + strand, within ABZR87_RS02350at 503.823 kb on + strand, within ABZR87_RS02350at 503.823 kb on + strand, within ABZR87_RS02350at 503.823 kb on + strand, within ABZR87_RS02350at 503.824 kb on - strand, within ABZR87_RS02350at 504.060 kb on + strand, within ABZR87_RS02350at 504.061 kb on - strand, within ABZR87_RS02350at 504.061 kb on - strand, within ABZR87_RS02350at 504.091 kb on - strand, within ABZR87_RS02350at 504.189 kb on + strand, within ABZR87_RS02350at 504.190 kb on - strand, within ABZR87_RS02350at 504.213 kb on + strand, within ABZR87_RS02350at 504.213 kb on + strand, within ABZR87_RS02350at 504.213 kb on + strand, within ABZR87_RS02350at 504.213 kb on + strand, within ABZR87_RS02350at 504.214 kb on - strand, within ABZR87_RS02350at 504.214 kb on - strand, within ABZR87_RS02350at 504.214 kb on - strand, within ABZR87_RS02350at 504.214 kb on - strand, within ABZR87_RS02350at 504.234 kb on + strand, within ABZR87_RS02350

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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502,128 + ABZR87_RS02340 0.45 -1.0
502,128 + ABZR87_RS02340 0.45 +0.7
502,128 + ABZR87_RS02340 0.45 +1.2
502,128 + ABZR87_RS02340 0.45 -0.1
502,128 + ABZR87_RS02340 0.45 +0.1
502,129 - ABZR87_RS02340 0.45 +0.7
502,129 - ABZR87_RS02340 0.45 -0.8
502,129 - ABZR87_RS02340 0.45 -0.4
502,129 - ABZR87_RS02340 0.45 +0.4
502,275 + ABZR87_RS02340 0.54 +0.4
502,275 + ABZR87_RS02340 0.54 -0.2
502,275 + ABZR87_RS02340 0.54 +0.3
502,276 - ABZR87_RS02340 0.54 +0.6
502,276 - ABZR87_RS02340 0.54 -1.2
502,276 - ABZR87_RS02340 0.54 +0.4
502,566 + ABZR87_RS02340 0.72 -0.1
502,567 - ABZR87_RS02340 0.72 -0.6
502,567 - ABZR87_RS02340 0.72 +0.2
502,660 + ABZR87_RS02340 0.78 +1.8
502,660 + ABZR87_RS02340 0.78 +0.0
502,661 - ABZR87_RS02340 0.78 -1.6
502,741 - ABZR87_RS02340 0.83 +0.1
502,741 - ABZR87_RS02340 0.83 +0.7
502,741 - ABZR87_RS02340 0.83 -0.3
502,741 - ABZR87_RS02340 0.83 +0.7
502,741 - ABZR87_RS02340 0.83 -0.1
502,775 + ABZR87_RS02340 0.85 -0.2
502,775 + ABZR87_RS02340 0.85 -0.2
502,775 + ABZR87_RS02340 0.85 -2.2
502,775 + ABZR87_RS02340 0.85 +0.8
502,776 - ABZR87_RS02340 0.85 -0.1
502,776 - ABZR87_RS02340 0.85 +0.1
502,776 - ABZR87_RS02340 0.85 -1.7
502,776 - ABZR87_RS02340 0.85 -0.5
502,788 + ABZR87_RS02340 0.85 -0.5
502,789 - ABZR87_RS02340 0.86 -0.4
502,809 + ABZR87_RS02340 0.87 +0.3
502,809 + ABZR87_RS02340 0.87 +0.2
502,809 + ABZR87_RS02340 0.87 -0.1
502,810 - ABZR87_RS02340 0.87 -0.5
502,810 - ABZR87_RS02340 0.87 +0.5
502,810 - ABZR87_RS02340 0.87 +1.5
502,810 - ABZR87_RS02340 0.87 +0.5
502,810 - ABZR87_RS02340 0.87 +0.3
502,813 + ABZR87_RS02340 0.87 -0.3
502,813 + ABZR87_RS02340 0.87 +0.2
502,814 - ABZR87_RS02340 0.87 -1.5
503,016 - -0.0
503,059 + +0.3
503,059 + +1.2
503,059 + +0.3
503,059 + -0.0
503,060 - -0.5
503,065 + +0.9
503,065 + +0.4
503,065 + -1.6
503,065 + +0.5
503,065 + +0.6
503,066 - -0.2
503,066 - -1.0
503,098 + ABZR87_RS02345 0.19 -0.3
503,099 - ABZR87_RS02345 0.20 -1.1
503,429 + -0.6
503,451 - +0.2
503,472 + -0.5
503,472 + +0.8
503,472 + -0.1
503,473 - -0.2
503,473 - +0.0
503,473 - -0.2
503,473 - -0.3
503,484 + -0.4
503,484 + +0.6
503,485 - -0.5
503,491 - -0.4
503,491 - +0.8
503,491 - -0.2
503,511 - -0.6
503,547 + -0.4
503,547 + -1.9
503,563 + +0.8
503,564 - -1.1
503,613 + -1.3
503,613 + +0.3
503,614 - +0.4
503,614 - +0.7
503,614 - -0.0
503,614 - +1.3
503,643 + ABZR87_RS02350 0.11 +0.0
503,643 + ABZR87_RS02350 0.11 +0.1
503,643 + ABZR87_RS02350 0.11 -0.9
503,643 + ABZR87_RS02350 0.11 +0.4
503,643 + ABZR87_RS02350 0.11 -1.2
503,694 + ABZR87_RS02350 0.15 +0.1
503,695 - ABZR87_RS02350 0.15 -0.1
503,695 - ABZR87_RS02350 0.15 -0.0
503,823 + ABZR87_RS02350 0.24 +1.8
503,823 + ABZR87_RS02350 0.24 -0.7
503,823 + ABZR87_RS02350 0.24 +0.8
503,823 + ABZR87_RS02350 0.24 +0.7
503,824 - ABZR87_RS02350 0.24 +0.4
504,060 + ABZR87_RS02350 0.41 +0.2
504,061 - ABZR87_RS02350 0.41 +0.7
504,061 - ABZR87_RS02350 0.41 +0.3
504,091 - ABZR87_RS02350 0.43 -1.4
504,189 + ABZR87_RS02350 0.50 +0.8
504,190 - ABZR87_RS02350 0.50 +0.5
504,213 + ABZR87_RS02350 0.52 +0.4
504,213 + ABZR87_RS02350 0.52 +0.3
504,213 + ABZR87_RS02350 0.52 -0.5
504,213 + ABZR87_RS02350 0.52 -0.8
504,214 - ABZR87_RS02350 0.52 +0.5
504,214 - ABZR87_RS02350 0.52 +0.9
504,214 - ABZR87_RS02350 0.52 +0.5
504,214 - ABZR87_RS02350 0.52 -0.7
504,234 + ABZR87_RS02350 0.53 -0.7

Or see this region's nucleotide sequence