Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01980 and ABZR87_RS01985 are separated by 9 nucleotides ABZR87_RS01985 and ABZR87_RS01990 are separated by 380 nucleotides ABZR87_RS01990 and ABZR87_RS01995 are separated by 380 nucleotides
ABZR87_RS01980: ABZR87_RS01980 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 422,347 to 423,306
_RS01980
ABZR87_RS01985: ABZR87_RS01985 - division/cell wall cluster transcriptional repressor MraZ, at 423,316 to 423,744
_RS01985
ABZR87_RS01990: ABZR87_RS01990 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 424,125 to 424,778
_RS01990
ABZR87_RS01995: ABZR87_RS01995 - porin, at 425,159 to 426,337
_RS01995
Position (kb) 424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 423.216 kb on - strand at 423.216 kb on - strand at 423.216 kb on - strand at 423.384 kb on - strand, within ABZR87_RS01985 at 423.384 kb on - strand, within ABZR87_RS01985 at 423.819 kb on - strand at 423.859 kb on - strand at 423.932 kb on + strand at 423.932 kb on + strand at 423.986 kb on - strand at 423.986 kb on - strand at 423.986 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.135 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.880 kb on + strand at 424.919 kb on + strand at 424.920 kb on - strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.061 kb on + strand at 425.061 kb on + strand at 425.061 kb on + strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.135 kb on - strand at 425.135 kb on - strand at 425.135 kb on - strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.308 kb on - strand, within ABZR87_RS01995 at 425.392 kb on - strand, within ABZR87_RS01995 at 425.433 kb on - strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.582 kb on + strand, within ABZR87_RS01995 at 425.594 kb on + strand, within ABZR87_RS01995 at 425.594 kb on + strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.652 kb on - strand, within ABZR87_RS01995 at 425.652 kb on - strand, within ABZR87_RS01995 at 425.753 kb on + strand, within ABZR87_RS01995 at 425.753 kb on + strand, within ABZR87_RS01995 at 425.754 kb on - strand, within ABZR87_RS01995 at 425.754 kb on - strand, within ABZR87_RS01995
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 423,216 - +0.8 423,216 - -0.5 423,216 - +0.2 423,384 - ABZR87_RS01985 0.16 +0.8 423,384 - ABZR87_RS01985 0.16 -1.5 423,819 - -0.6 423,859 - +0.2 423,932 + -3.5 423,932 + -1.0 423,986 - +0.2 423,986 - +0.1 423,986 - -0.8 424,000 - -1.0 424,000 - +0.2 424,000 - -0.2 424,000 - +0.1 424,135 + -0.3 424,778 + -0.6 424,778 + -1.2 424,778 + -0.4 424,778 + +0.0 424,778 + -0.8 424,778 + -0.6 424,778 + +0.7 424,778 + -0.8 424,779 - +0.5 424,779 - -0.4 424,779 - -0.8 424,779 - -0.8 424,779 - +0.0 424,779 - +0.2 424,779 - -0.3 424,779 - -0.6 424,779 - +1.8 424,779 - +1.6 424,779 - +1.3 424,779 - +1.0 424,779 - +0.2 424,782 + -0.3 424,782 + -1.0 424,782 + +1.5 424,782 + +0.1 424,782 + -1.9 424,782 + +0.6 424,782 + -0.2 424,782 + -0.3 424,782 + -0.1 424,783 - +0.8 424,783 - -0.3 424,783 - +0.2 424,783 - -0.7 424,783 - +0.5 424,783 - -0.2 424,783 - -1.6 424,783 - -0.4 424,783 - +0.3 424,824 + -0.2 424,824 + -0.4 424,824 + +0.3 424,824 + +1.2 424,824 + -0.5 424,825 - -0.6 424,825 - +1.8 424,825 - -1.2 424,825 - -0.5 424,825 - -0.0 424,825 - +0.1 424,880 + +1.8 424,919 + -0.1 424,920 - -1.8 425,056 + +0.3 425,056 + +0.4 425,056 + -0.0 425,056 + -0.1 425,057 - +0.1 425,057 - +0.4 425,057 - -0.9 425,057 - -0.5 425,057 - +0.5 425,057 - -0.8 425,057 - -0.1 425,057 - -0.3 425,057 - +0.2 425,057 - -0.1 425,061 + -0.0 425,061 + -0.4 425,061 + -0.4 425,062 - +0.1 425,062 - +0.1 425,062 - +0.1 425,062 - +0.9 425,062 - +0.9 425,062 - -0.5 425,062 - +0.1 425,062 - +0.4 425,062 - +0.0 425,062 - -0.0 425,134 + +0.5 425,134 + +0.3 425,134 + -0.0 425,134 + +0.7 425,134 + -0.8 425,135 - -0.3 425,135 - -0.1 425,135 - -0.5 425,138 + -0.1 425,138 + -0.6 425,138 + +0.8 425,138 + -0.2 425,139 - +0.1 425,139 - -1.2 425,139 - +1.3 425,139 - +0.9 425,139 - +0.3 425,139 - +0.2 425,237 + +0.1 425,237 + +0.9 425,237 + +0.7 425,237 + -0.5 425,238 - -0.5 425,238 - +0.0 425,238 - -0.5 425,238 - -1.9 425,264 + +0.7 425,264 + +0.5 425,264 + +0.0 425,264 + -1.4 425,265 - +0.2 425,265 - +0.2 425,265 - -0.8 425,265 - -0.4 425,265 - -0.8 425,265 - +0.2 425,308 - ABZR87_RS01995 0.13 -0.1 425,392 - ABZR87_RS01995 0.20 -0.5 425,433 - ABZR87_RS01995 0.23 -0.8 425,537 + ABZR87_RS01995 0.32 -0.8 425,537 + ABZR87_RS01995 0.32 -0.3 425,537 + ABZR87_RS01995 0.32 +1.1 425,537 + ABZR87_RS01995 0.32 -1.6 425,537 + ABZR87_RS01995 0.32 -0.5 425,538 - ABZR87_RS01995 0.32 -1.0 425,538 - ABZR87_RS01995 0.32 +0.1 425,538 - ABZR87_RS01995 0.32 -0.3 425,538 - ABZR87_RS01995 0.32 +0.3 425,538 - ABZR87_RS01995 0.32 +1.1 425,538 - ABZR87_RS01995 0.32 -0.6 425,582 + ABZR87_RS01995 0.36 +0.0 425,594 + ABZR87_RS01995 0.37 +1.2 425,594 + ABZR87_RS01995 0.37 -0.0 425,595 - ABZR87_RS01995 0.37 +0.0 425,595 - ABZR87_RS01995 0.37 +0.4 425,595 - ABZR87_RS01995 0.37 +1.2 425,595 - ABZR87_RS01995 0.37 -1.1 425,651 + ABZR87_RS01995 0.42 -0.0 425,651 + ABZR87_RS01995 0.42 -1.4 425,651 + ABZR87_RS01995 0.42 +1.0 425,651 + ABZR87_RS01995 0.42 -0.2 425,651 + ABZR87_RS01995 0.42 -0.2 425,652 - ABZR87_RS01995 0.42 +0.3 425,652 - ABZR87_RS01995 0.42 -0.7 425,753 + ABZR87_RS01995 0.50 -0.2 425,753 + ABZR87_RS01995 0.50 -1.5 425,754 - ABZR87_RS01995 0.50 +2.2 425,754 - ABZR87_RS01995 0.50 -1.1
Or see this region's nucleotide sequence