Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01885

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01875 and ABZR87_RS01880 overlap by 11 nucleotidesABZR87_RS01880 and ABZR87_RS01885 are separated by 16 nucleotidesABZR87_RS01885 and ABZR87_RS01890 are separated by 73 nucleotides ABZR87_RS01875: ABZR87_RS01875 - NUDIX domain-containing protein, at 396,716 to 397,165 _RS01875 ABZR87_RS01880: ABZR87_RS01880 - ATP-binding protein, at 397,155 to 398,039 _RS01880 ABZR87_RS01885: ABZR87_RS01885 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 398,056 to 399,285 _RS01885 ABZR87_RS01890: ABZR87_RS01890 - preprotein translocase subunit SecA, at 399,359 to 402,163 _RS01890 Position (kb) 398 399 400Strain fitness (log2 ratio) -2 -1 0 1 2 3at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.352 kb on - strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.445 kb on - strand, within ABZR87_RS01880at 397.445 kb on - strand, within ABZR87_RS01880at 397.445 kb on - strand, within ABZR87_RS01880at 397.465 kb on + strand, within ABZR87_RS01880at 397.465 kb on + strand, within ABZR87_RS01880at 397.465 kb on + strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.565 kb on - strand, within ABZR87_RS01880at 397.565 kb on - strand, within ABZR87_RS01880at 397.894 kb on + strand, within ABZR87_RS01880at 398.057 kb on + strandat 398.058 kb on - strandat 398.066 kb on + strandat 398.066 kb on + strandat 398.067 kb on - strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.336 kb on + strand, within ABZR87_RS01885at 398.336 kb on + strand, within ABZR87_RS01885at 398.336 kb on + strand, within ABZR87_RS01885at 398.337 kb on - strand, within ABZR87_RS01885at 398.337 kb on - strand, within ABZR87_RS01885at 398.337 kb on - strand, within ABZR87_RS01885at 398.337 kb on - strand, within ABZR87_RS01885at 398.376 kb on - strand, within ABZR87_RS01885at 398.516 kb on + strand, within ABZR87_RS01885at 398.516 kb on + strand, within ABZR87_RS01885at 398.517 kb on - strand, within ABZR87_RS01885at 398.806 kb on + strand, within ABZR87_RS01885at 398.807 kb on - strand, within ABZR87_RS01885at 399.567 kb on + strandat 399.567 kb on + strandat 399.568 kb on - strandat 399.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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397,330 + ABZR87_RS01880 0.20 -0.5
397,330 + ABZR87_RS01880 0.20 -0.7
397,330 + ABZR87_RS01880 0.20 -0.5
397,330 + ABZR87_RS01880 0.20 -1.0
397,330 + ABZR87_RS01880 0.20 +0.3
397,330 + ABZR87_RS01880 0.20 -0.2
397,330 + ABZR87_RS01880 0.20 -0.5
397,331 - ABZR87_RS01880 0.20 +0.2
397,331 - ABZR87_RS01880 0.20 -1.6
397,331 - ABZR87_RS01880 0.20 -0.9
397,331 - ABZR87_RS01880 0.20 +0.4
397,352 - ABZR87_RS01880 0.22 +0.4
397,444 + ABZR87_RS01880 0.33 -0.6
397,444 + ABZR87_RS01880 0.33 +0.6
397,444 + ABZR87_RS01880 0.33 +1.4
397,444 + ABZR87_RS01880 0.33 -0.1
397,444 + ABZR87_RS01880 0.33 +0.3
397,445 - ABZR87_RS01880 0.33 -0.3
397,445 - ABZR87_RS01880 0.33 -1.8
397,445 - ABZR87_RS01880 0.33 -0.4
397,465 + ABZR87_RS01880 0.35 +0.1
397,465 + ABZR87_RS01880 0.35 -0.4
397,465 + ABZR87_RS01880 0.35 -0.8
397,466 - ABZR87_RS01880 0.35 -0.3
397,466 - ABZR87_RS01880 0.35 +0.6
397,466 - ABZR87_RS01880 0.35 +0.4
397,466 - ABZR87_RS01880 0.35 -0.2
397,466 - ABZR87_RS01880 0.35 -0.3
397,466 - ABZR87_RS01880 0.35 -1.1
397,501 + ABZR87_RS01880 0.39 -0.0
397,501 + ABZR87_RS01880 0.39 -0.1
397,501 + ABZR87_RS01880 0.39 +0.0
397,501 + ABZR87_RS01880 0.39 -0.4
397,501 + ABZR87_RS01880 0.39 -0.6
397,501 + ABZR87_RS01880 0.39 +0.1
397,501 + ABZR87_RS01880 0.39 +0.2
397,502 - ABZR87_RS01880 0.39 -0.5
397,502 - ABZR87_RS01880 0.39 +1.2
397,502 - ABZR87_RS01880 0.39 +1.0
397,502 - ABZR87_RS01880 0.39 -1.2
397,565 - ABZR87_RS01880 0.46 +0.0
397,565 - ABZR87_RS01880 0.46 -0.5
397,894 + ABZR87_RS01880 0.84 -2.3
398,057 + -0.0
398,058 - -0.0
398,066 + -1.3
398,066 + -0.6
398,067 - -1.9
398,087 + -1.3
398,087 + -1.9
398,087 + -0.8
398,087 + -1.1
398,087 + +0.1
398,087 + -1.8
398,088 - -1.1
398,088 - -0.2
398,088 - -1.4
398,088 - +0.0
398,088 - -0.2
398,088 - -1.0
398,088 - -0.2
398,336 + ABZR87_RS01885 0.23 -0.8
398,336 + ABZR87_RS01885 0.23 -0.8
398,336 + ABZR87_RS01885 0.23 -1.2
398,337 - ABZR87_RS01885 0.23 +2.8
398,337 - ABZR87_RS01885 0.23 +0.2
398,337 - ABZR87_RS01885 0.23 -1.5
398,337 - ABZR87_RS01885 0.23 -0.3
398,376 - ABZR87_RS01885 0.26 -1.2
398,516 + ABZR87_RS01885 0.37 +0.4
398,516 + ABZR87_RS01885 0.37 +0.0
398,517 - ABZR87_RS01885 0.37 -1.1
398,806 + ABZR87_RS01885 0.61 -2.1
398,807 - ABZR87_RS01885 0.61 -0.7
399,567 + -0.3
399,567 + +0.8
399,568 - -0.1
399,568 - +0.2

Or see this region's nucleotide sequence