Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01875

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01865 and ABZR87_RS01870 are separated by 8 nucleotidesABZR87_RS01870 and ABZR87_RS01875 overlap by 8 nucleotidesABZR87_RS01875 and ABZR87_RS01880 overlap by 11 nucleotidesABZR87_RS01880 and ABZR87_RS01885 are separated by 16 nucleotides ABZR87_RS01865: ABZR87_RS01865 - cell division protein ZapD, at 395,753 to 396,511 _RS01865 ABZR87_RS01870: ABZR87_RS01870 - DNA gyrase inhibitor YacG, at 396,520 to 396,723 _RS01870 ABZR87_RS01875: ABZR87_RS01875 - NUDIX domain-containing protein, at 396,716 to 397,165 _RS01875 ABZR87_RS01880: ABZR87_RS01880 - ATP-binding protein, at 397,155 to 398,039 _RS01880 ABZR87_RS01885: ABZR87_RS01885 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 398,056 to 399,285 _RS01885 Position (kb) 396 397 398Strain fitness (log2 ratio) -2 -1 0 1at 395.719 kb on + strandat 395.719 kb on + strandat 395.720 kb on - strandat 395.720 kb on - strandat 395.720 kb on - strandat 395.762 kb on + strandat 395.762 kb on + strandat 395.762 kb on + strandat 395.763 kb on - strandat 395.768 kb on + strandat 395.770 kb on + strandat 396.136 kb on + strand, within ABZR87_RS01865at 396.136 kb on + strand, within ABZR87_RS01865at 396.136 kb on + strand, within ABZR87_RS01865at 396.137 kb on - strand, within ABZR87_RS01865at 396.137 kb on - strand, within ABZR87_RS01865at 396.161 kb on + strand, within ABZR87_RS01865at 396.162 kb on - strand, within ABZR87_RS01865at 396.304 kb on + strand, within ABZR87_RS01865at 396.305 kb on - strand, within ABZR87_RS01865at 396.317 kb on + strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.345 kb on - strand, within ABZR87_RS01865at 396.360 kb on + strand, within ABZR87_RS01865at 396.360 kb on + strand, within ABZR87_RS01865at 396.361 kb on - strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.433 kb on + strand, within ABZR87_RS01865at 396.433 kb on + strand, within ABZR87_RS01865at 396.649 kb on + strand, within ABZR87_RS01870at 396.649 kb on + strand, within ABZR87_RS01870at 396.649 kb on + strand, within ABZR87_RS01870at 396.649 kb on + strand, within ABZR87_RS01870at 396.649 kb on + strand, within ABZR87_RS01870at 396.650 kb on - strand, within ABZR87_RS01870at 396.702 kb on + strand, within ABZR87_RS01870at 396.702 kb on + strand, within ABZR87_RS01870at 396.702 kb on + strand, within ABZR87_RS01870at 396.702 kb on + strand, within ABZR87_RS01870at 396.703 kb on - strandat 396.721 kb on + strandat 396.722 kb on - strandat 396.879 kb on + strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.892 kb on - strand, within ABZR87_RS01875at 396.905 kb on - strand, within ABZR87_RS01875at 396.905 kb on - strand, within ABZR87_RS01875at 397.020 kb on + strand, within ABZR87_RS01875at 397.029 kb on + strand, within ABZR87_RS01875at 397.029 kb on + strand, within ABZR87_RS01875at 397.029 kb on + strand, within ABZR87_RS01875at 397.030 kb on - strand, within ABZR87_RS01875at 397.030 kb on - strand, within ABZR87_RS01875at 397.030 kb on - strand, within ABZR87_RS01875at 397.030 kb on - strand, within ABZR87_RS01875at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.352 kb on - strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.445 kb on - strand, within ABZR87_RS01880at 397.445 kb on - strand, within ABZR87_RS01880at 397.445 kb on - strand, within ABZR87_RS01880at 397.465 kb on + strand, within ABZR87_RS01880at 397.465 kb on + strand, within ABZR87_RS01880at 397.465 kb on + strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.565 kb on - strand, within ABZR87_RS01880at 397.565 kb on - strand, within ABZR87_RS01880at 397.894 kb on + strand, within ABZR87_RS01880at 398.057 kb on + strandat 398.058 kb on - strandat 398.066 kb on + strandat 398.066 kb on + strandat 398.067 kb on - strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.087 kb on + strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strandat 398.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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395,719 + -0.8
395,719 + -1.6
395,720 - +0.2
395,720 - +0.1
395,720 - +0.1
395,762 + -0.2
395,762 + +0.0
395,762 + +0.6
395,763 - -0.5
395,768 + +1.2
395,770 + +0.9
396,136 + ABZR87_RS01865 0.50 -1.9
396,136 + ABZR87_RS01865 0.50 +1.0
396,136 + ABZR87_RS01865 0.50 -0.6
396,137 - ABZR87_RS01865 0.51 +0.3
396,137 - ABZR87_RS01865 0.51 +1.2
396,161 + ABZR87_RS01865 0.54 -0.1
396,162 - ABZR87_RS01865 0.54 +0.6
396,304 + ABZR87_RS01865 0.73 -0.5
396,305 - ABZR87_RS01865 0.73 +0.1
396,317 + ABZR87_RS01865 0.74 -1.3
396,318 - ABZR87_RS01865 0.74 -0.1
396,318 - ABZR87_RS01865 0.74 -0.8
396,318 - ABZR87_RS01865 0.74 +0.5
396,318 - ABZR87_RS01865 0.74 +0.4
396,345 - ABZR87_RS01865 0.78 -0.9
396,360 + ABZR87_RS01865 0.80 +0.8
396,360 + ABZR87_RS01865 0.80 +0.7
396,361 - ABZR87_RS01865 0.80 +0.4
396,413 + ABZR87_RS01865 0.87 +0.2
396,413 + ABZR87_RS01865 0.87 -0.6
396,413 + ABZR87_RS01865 0.87 +0.2
396,413 + ABZR87_RS01865 0.87 -0.6
396,413 + ABZR87_RS01865 0.87 +0.5
396,413 + ABZR87_RS01865 0.87 -0.2
396,413 + ABZR87_RS01865 0.87 -1.1
396,414 - ABZR87_RS01865 0.87 -0.3
396,414 - ABZR87_RS01865 0.87 -0.1
396,414 - ABZR87_RS01865 0.87 -0.4
396,414 - ABZR87_RS01865 0.87 -0.3
396,414 - ABZR87_RS01865 0.87 -1.8
396,414 - ABZR87_RS01865 0.87 +0.3
396,414 - ABZR87_RS01865 0.87 +0.1
396,414 - ABZR87_RS01865 0.87 -0.2
396,414 - ABZR87_RS01865 0.87 -0.3
396,414 - ABZR87_RS01865 0.87 -0.2
396,414 - ABZR87_RS01865 0.87 +1.6
396,414 - ABZR87_RS01865 0.87 +1.0
396,414 - ABZR87_RS01865 0.87 -0.1
396,414 - ABZR87_RS01865 0.87 +0.5
396,433 + ABZR87_RS01865 0.90 -0.4
396,433 + ABZR87_RS01865 0.90 -0.7
396,649 + ABZR87_RS01870 0.63 +0.1
396,649 + ABZR87_RS01870 0.63 -0.1
396,649 + ABZR87_RS01870 0.63 -0.7
396,649 + ABZR87_RS01870 0.63 -1.3
396,649 + ABZR87_RS01870 0.63 -0.5
396,650 - ABZR87_RS01870 0.64 -1.9
396,702 + ABZR87_RS01870 0.89 -0.7
396,702 + ABZR87_RS01870 0.89 +0.7
396,702 + ABZR87_RS01870 0.89 +0.5
396,702 + ABZR87_RS01870 0.89 -0.6
396,703 - +0.3
396,721 + -0.4
396,722 - -0.2
396,879 + ABZR87_RS01875 0.36 +0.1
396,880 - ABZR87_RS01875 0.36 +0.2
396,880 - ABZR87_RS01875 0.36 -0.9
396,880 - ABZR87_RS01875 0.36 -0.8
396,880 - ABZR87_RS01875 0.36 +0.5
396,880 - ABZR87_RS01875 0.36 -0.5
396,880 - ABZR87_RS01875 0.36 +1.2
396,880 - ABZR87_RS01875 0.36 -0.6
396,880 - ABZR87_RS01875 0.36 +0.2
396,892 - ABZR87_RS01875 0.39 +0.1
396,905 - ABZR87_RS01875 0.42 -0.4
396,905 - ABZR87_RS01875 0.42 +0.2
397,020 + ABZR87_RS01875 0.68 -0.6
397,029 + ABZR87_RS01875 0.70 +0.7
397,029 + ABZR87_RS01875 0.70 -0.4
397,029 + ABZR87_RS01875 0.70 -0.2
397,030 - ABZR87_RS01875 0.70 -1.4
397,030 - ABZR87_RS01875 0.70 -1.7
397,030 - ABZR87_RS01875 0.70 -0.1
397,030 - ABZR87_RS01875 0.70 +0.5
397,330 + ABZR87_RS01880 0.20 -0.5
397,330 + ABZR87_RS01880 0.20 -0.7
397,330 + ABZR87_RS01880 0.20 -0.5
397,330 + ABZR87_RS01880 0.20 -1.0
397,330 + ABZR87_RS01880 0.20 +0.3
397,330 + ABZR87_RS01880 0.20 -0.2
397,330 + ABZR87_RS01880 0.20 -0.5
397,331 - ABZR87_RS01880 0.20 +0.2
397,331 - ABZR87_RS01880 0.20 -1.6
397,331 - ABZR87_RS01880 0.20 -0.9
397,331 - ABZR87_RS01880 0.20 +0.4
397,352 - ABZR87_RS01880 0.22 +0.4
397,444 + ABZR87_RS01880 0.33 -0.6
397,444 + ABZR87_RS01880 0.33 +0.6
397,444 + ABZR87_RS01880 0.33 +1.4
397,444 + ABZR87_RS01880 0.33 -0.1
397,444 + ABZR87_RS01880 0.33 +0.3
397,445 - ABZR87_RS01880 0.33 -0.3
397,445 - ABZR87_RS01880 0.33 -1.8
397,445 - ABZR87_RS01880 0.33 -0.4
397,465 + ABZR87_RS01880 0.35 +0.1
397,465 + ABZR87_RS01880 0.35 -0.4
397,465 + ABZR87_RS01880 0.35 -0.8
397,466 - ABZR87_RS01880 0.35 -0.3
397,466 - ABZR87_RS01880 0.35 +0.6
397,466 - ABZR87_RS01880 0.35 +0.4
397,466 - ABZR87_RS01880 0.35 -0.2
397,466 - ABZR87_RS01880 0.35 -0.3
397,466 - ABZR87_RS01880 0.35 -1.1
397,501 + ABZR87_RS01880 0.39 -0.0
397,501 + ABZR87_RS01880 0.39 -0.1
397,501 + ABZR87_RS01880 0.39 +0.0
397,501 + ABZR87_RS01880 0.39 -0.4
397,501 + ABZR87_RS01880 0.39 -0.6
397,501 + ABZR87_RS01880 0.39 +0.1
397,501 + ABZR87_RS01880 0.39 +0.2
397,502 - ABZR87_RS01880 0.39 -0.5
397,502 - ABZR87_RS01880 0.39 +1.2
397,502 - ABZR87_RS01880 0.39 +1.0
397,502 - ABZR87_RS01880 0.39 -1.2
397,565 - ABZR87_RS01880 0.46 +0.0
397,565 - ABZR87_RS01880 0.46 -0.5
397,894 + ABZR87_RS01880 0.84 -2.3
398,057 + -0.0
398,058 - -0.0
398,066 + -1.3
398,066 + -0.6
398,067 - -1.9
398,087 + -1.3
398,087 + -1.9
398,087 + -0.8
398,087 + -1.1
398,087 + +0.1
398,087 + -1.8
398,088 - -1.1
398,088 - -0.2
398,088 - -1.4
398,088 - +0.0
398,088 - -0.2
398,088 - -1.0
398,088 - -0.2

Or see this region's nucleotide sequence