Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01765 and ABZR87_RS01770 are separated by 173 nucleotides ABZR87_RS01770 and ABZR87_RS01775 are separated by 68 nucleotides ABZR87_RS01775 and ABZR87_RS01780 are separated by 65 nucleotides
ABZR87_RS01765: ABZR87_RS01765 - cytochrome c biogenesis protein CcsA, at 376,051 to 376,962
_RS01765
ABZR87_RS01770: ABZR87_RS01770 - signal recognition particle protein, at 377,136 to 378,551
_RS01770
ABZR87_RS01775: ABZR87_RS01775 - hypoxanthine-guanine phosphoribosyltransferase, at 378,620 to 379,168
_RS01775
ABZR87_RS01780: ABZR87_RS01780 - MarC family protein, at 379,234 to 379,827
_RS01780
Position (kb) 377
378
379 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 376.478 kb on + strand, within ABZR87_RS01765 at 376.478 kb on + strand, within ABZR87_RS01765 at 376.530 kb on - strand, within ABZR87_RS01765 at 376.530 kb on - strand, within ABZR87_RS01765 at 376.682 kb on + strand, within ABZR87_RS01765 at 376.925 kb on + strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.946 kb on + strand at 376.946 kb on + strand at 376.946 kb on + strand at 376.946 kb on + strand at 376.947 kb on - strand at 376.951 kb on + strand at 376.951 kb on + strand at 376.951 kb on + strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 377.052 kb on + strand at 377.052 kb on + strand at 377.052 kb on + strand at 378.830 kb on + strand, within ABZR87_RS01775 at 378.830 kb on + strand, within ABZR87_RS01775 at 378.831 kb on - strand, within ABZR87_RS01775 at 378.831 kb on - strand, within ABZR87_RS01775 at 378.831 kb on - strand, within ABZR87_RS01775 at 378.916 kb on + strand, within ABZR87_RS01775 at 378.917 kb on - strand, within ABZR87_RS01775 at 379.008 kb on - strand, within ABZR87_RS01775 at 379.055 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.092 kb on - strand, within ABZR87_RS01775 at 379.124 kb on + strand at 379.125 kb on - strand at 379.125 kb on - strand at 379.405 kb on + strand, within ABZR87_RS01780 at 379.405 kb on + strand, within ABZR87_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 376,478 + ABZR87_RS01765 0.47 +1.0 376,478 + ABZR87_RS01765 0.47 +2.8 376,530 - ABZR87_RS01765 0.53 -0.4 376,530 - ABZR87_RS01765 0.53 +0.2 376,682 + ABZR87_RS01765 0.69 +1.7 376,925 + +1.3 376,926 - +0.4 376,926 - +0.4 376,926 - +2.8 376,946 + +1.7 376,946 + +1.3 376,946 + +1.7 376,946 + +0.7 376,947 - -0.7 376,951 + +1.6 376,951 + +1.8 376,951 + +1.9 376,952 - +0.8 376,952 - +1.6 376,952 - -0.1 376,952 - -0.5 376,952 - -0.5 376,952 - -0.3 377,052 + +1.2 377,052 + +1.2 377,052 + -1.5 378,830 + ABZR87_RS01775 0.38 -0.2 378,830 + ABZR87_RS01775 0.38 +0.0 378,831 - ABZR87_RS01775 0.38 -0.4 378,831 - ABZR87_RS01775 0.38 +0.1 378,831 - ABZR87_RS01775 0.38 +0.8 378,916 + ABZR87_RS01775 0.54 -1.2 378,917 - ABZR87_RS01775 0.54 +0.4 379,008 - ABZR87_RS01775 0.71 -0.2 379,055 + ABZR87_RS01775 0.79 -1.0 379,091 + ABZR87_RS01775 0.86 -0.4 379,091 + ABZR87_RS01775 0.86 -0.4 379,091 + ABZR87_RS01775 0.86 -0.0 379,092 - ABZR87_RS01775 0.86 +0.5 379,124 + +0.7 379,125 - -0.5 379,125 - -2.4 379,405 + ABZR87_RS01780 0.29 +0.6 379,405 + ABZR87_RS01780 0.29 +1.6
Or see this region's nucleotide sequence