Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01695 and ABZR87_RS01700 are separated by 66 nucleotides ABZR87_RS01700 and ABZR87_RS01705 are separated by 325 nucleotides
ABZR87_RS01695: ABZR87_RS01695 - collagen-like triple helix repeat-containing protein, at 355,875 to 357,032
_RS01695
ABZR87_RS01700: ABZR87_RS01700 - DUF2147 domain-containing protein, at 357,099 to 357,554
_RS01700
ABZR87_RS01705: ABZR87_RS01705 - hypothetical protein, at 357,880 to 359,220
_RS01705
Position (kb) 357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 356.622 kb on - strand, within ABZR87_RS01695 at 356.622 kb on - strand, within ABZR87_RS01695 at 357.107 kb on + strand at 357.107 kb on + strand at 357.107 kb on + strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.447 kb on + strand, within ABZR87_RS01700 at 357.448 kb on - strand, within ABZR87_RS01700 at 357.576 kb on + strand at 357.576 kb on + strand at 357.665 kb on - strand at 357.665 kb on - strand at 357.702 kb on - strand at 357.725 kb on + strand at 357.725 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.859 kb on + strand at 357.860 kb on - strand at 357.875 kb on + strand at 357.949 kb on + strand at 357.949 kb on + strand at 357.949 kb on + strand at 357.949 kb on + strand at 357.950 kb on - strand at 357.950 kb on - strand at 357.950 kb on - strand at 357.950 kb on - strand at 358.166 kb on + strand, within ABZR87_RS01705 at 358.167 kb on - strand, within ABZR87_RS01705 at 358.255 kb on + strand, within ABZR87_RS01705 at 358.256 kb on - strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.430 kb on - strand, within ABZR87_RS01705 at 358.430 kb on - strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 356,622 - ABZR87_RS01695 0.65 -0.3 356,622 - ABZR87_RS01695 0.65 +0.0 357,107 + -1.7 357,107 + +0.5 357,107 + -0.4 357,108 - +0.4 357,108 - -0.0 357,108 - +1.2 357,108 - -0.2 357,108 - +0.9 357,108 - +1.0 357,447 + ABZR87_RS01700 0.76 -2.9 357,448 - ABZR87_RS01700 0.77 -1.2 357,576 + -0.3 357,576 + -0.0 357,665 - +0.4 357,665 - +1.4 357,702 - -0.6 357,725 + -1.0 357,725 + -0.0 357,836 + +0.5 357,836 + +0.2 357,836 + +0.0 357,836 + +0.2 357,836 + +1.8 357,836 + -0.8 357,836 + -0.0 357,837 - -1.3 357,837 - -0.4 357,837 - +0.4 357,837 - +0.7 357,837 - +0.8 357,837 - +0.6 357,837 - +0.2 357,837 - +0.7 357,837 - +0.1 357,837 - +0.5 357,837 - -0.2 357,859 + -1.3 357,860 - -0.5 357,875 + +0.2 357,949 + -0.4 357,949 + -0.9 357,949 + +0.2 357,949 + -1.1 357,950 - -0.5 357,950 - +0.1 357,950 - +0.0 357,950 - +0.7 358,166 + ABZR87_RS01705 0.21 -0.7 358,167 - ABZR87_RS01705 0.21 -0.2 358,255 + ABZR87_RS01705 0.28 +0.7 358,256 - ABZR87_RS01705 0.28 -0.3 358,429 + ABZR87_RS01705 0.41 -1.4 358,429 + ABZR87_RS01705 0.41 -1.2 358,429 + ABZR87_RS01705 0.41 +1.1 358,429 + ABZR87_RS01705 0.41 -0.0 358,429 + ABZR87_RS01705 0.41 -0.1 358,430 - ABZR87_RS01705 0.41 +0.3 358,430 - ABZR87_RS01705 0.41 -0.7 358,456 + ABZR87_RS01705 0.43 +0.2 358,456 + ABZR87_RS01705 0.43 +1.2 358,456 + ABZR87_RS01705 0.43 +0.2 358,456 + ABZR87_RS01705 0.43 -0.6 358,457 - ABZR87_RS01705 0.43 -0.3 358,457 - ABZR87_RS01705 0.43 +0.1 358,457 - ABZR87_RS01705 0.43 +0.2 358,457 - ABZR87_RS01705 0.43 +0.2
Or see this region's nucleotide sequence