Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01690 and ABZR87_RS01695 are separated by 132 nucleotides
ABZR87_RS01690: ABZR87_RS01690 - collagen-like triple helix repeat-containing protein, at 354,942 to 355,742
_RS01690
ABZR87_RS01695: ABZR87_RS01695 - collagen-like triple helix repeat-containing protein, at 355,875 to 357,032
_RS01695
Position (kb)
354
355
356 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.169 kb on + strand at 354.169 kb on + strand at 354.170 kb on - strand at 354.201 kb on + strand at 354.202 kb on - strand at 354.202 kb on - strand at 354.202 kb on - strand at 354.583 kb on - strand at 354.590 kb on + strand at 354.590 kb on + strand at 354.590 kb on + strand at 354.590 kb on + strand at 354.591 kb on - strand at 354.591 kb on - strand at 354.604 kb on + strand at 354.927 kb on + strand at 354.928 kb on - strand at 355.505 kb on + strand, within ABZR87_RS01690 at 355.679 kb on + strand at 355.679 kb on + strand at 355.679 kb on + strand at 355.679 kb on + strand at 355.679 kb on + strand at 355.740 kb on + strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.754 kb on + strand at 355.755 kb on - strand at 355.755 kb on - strand at 355.795 kb on + strand at 355.839 kb on + strand at 355.859 kb on + strand at 355.859 kb on + strand at 355.860 kb on - strand at 355.860 kb on - strand at 355.860 kb on - strand at 355.860 kb on - strand at 355.860 kb on - strand at 356.015 kb on + strand, within ABZR87_RS01695 at 356.015 kb on + strand, within ABZR87_RS01695 at 356.015 kb on + strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.622 kb on - strand, within ABZR87_RS01695 at 356.622 kb on - strand, within ABZR87_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 354,125 + -1.2 354,125 + -1.3 354,125 + -0.2 354,125 + -1.0 354,125 + -0.8 354,125 + -0.5 354,125 + -0.5 354,125 + -2.4 354,126 - -0.1 354,126 - -0.6 354,126 - -0.1 354,126 - -0.3 354,126 - +0.8 354,126 - +0.4 354,126 - -0.2 354,126 - -1.3 354,169 + -1.4 354,169 + +1.3 354,170 - +0.5 354,201 + +0.3 354,202 - +0.9 354,202 - -0.2 354,202 - -0.7 354,583 - -0.6 354,590 + -0.2 354,590 + -0.5 354,590 + +0.6 354,590 + +0.0 354,591 - -0.3 354,591 - -0.0 354,604 + -0.7 354,927 + +0.4 354,928 - +0.3 355,505 + ABZR87_RS01690 0.70 -0.9 355,679 + -0.4 355,679 + +0.4 355,679 + -0.1 355,679 + -0.7 355,679 + -0.2 355,740 + -0.2 355,741 - +1.1 355,741 - +0.4 355,741 - -0.6 355,741 - +0.8 355,741 - +0.4 355,754 + -0.2 355,755 - +0.4 355,755 - +0.8 355,795 + -0.1 355,839 + +2.8 355,859 + -0.3 355,859 + -0.2 355,860 - +0.1 355,860 - -0.6 355,860 - +1.2 355,860 - +0.1 355,860 - -0.9 356,015 + ABZR87_RS01695 0.12 +0.6 356,015 + ABZR87_RS01695 0.12 +0.6 356,015 + ABZR87_RS01695 0.12 -0.5 356,016 - ABZR87_RS01695 0.12 -2.3 356,016 - ABZR87_RS01695 0.12 -0.2 356,016 - ABZR87_RS01695 0.12 -0.5 356,016 - ABZR87_RS01695 0.12 +0.4 356,016 - ABZR87_RS01695 0.12 +0.9 356,016 - ABZR87_RS01695 0.12 +0.3 356,622 - ABZR87_RS01695 0.65 -0.3 356,622 - ABZR87_RS01695 0.65 +0.0
Or see this region's nucleotide sequence