Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01675 and ABZR87_RS01680 are separated by 9 nucleotides ABZR87_RS01680 and ABZR87_RS01685 are separated by 251 nucleotides
ABZR87_RS01675: ABZR87_RS01675 - carbohydrate kinase family protein, at 350,964 to 351,899
_RS01675
ABZR87_RS01680: ABZR87_RS01680 - membrane protein, at 351,909 to 352,376
_RS01680
ABZR87_RS01685: ABZR87_RS01685 - histone H1-like DNA-binding protein, at 352,628 to 353,203
_RS01685
Position (kb) 352
353
354 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 351.663 kb on + strand, within ABZR87_RS01675 at 351.664 kb on - strand, within ABZR87_RS01675 at 351.741 kb on + strand, within ABZR87_RS01675 at 351.741 kb on + strand, within ABZR87_RS01675 at 351.891 kb on + strand at 351.892 kb on - strand at 351.897 kb on + strand at 351.898 kb on - strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.004 kb on + strand, within ABZR87_RS01680 at 352.004 kb on + strand, within ABZR87_RS01680 at 352.004 kb on + strand, within ABZR87_RS01680 at 352.005 kb on - strand, within ABZR87_RS01680 at 352.005 kb on - strand, within ABZR87_RS01680 at 352.005 kb on - strand, within ABZR87_RS01680 at 352.051 kb on + strand, within ABZR87_RS01680 at 352.051 kb on + strand, within ABZR87_RS01680 at 352.052 kb on - strand, within ABZR87_RS01680 at 352.396 kb on - strand at 352.396 kb on - strand at 352.450 kb on + strand at 352.451 kb on - strand at 352.451 kb on - strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.468 kb on - strand at 352.468 kb on - strand at 352.468 kb on - strand at 352.468 kb on - strand at 352.554 kb on + strand at 352.629 kb on + strand at 352.629 kb on + strand at 352.629 kb on + strand at 352.630 kb on - strand at 352.630 kb on - strand at 352.630 kb on - strand at 352.630 kb on - strand at 352.630 kb on - strand at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.089 kb on + strand, within ABZR87_RS01685 at 353.188 kb on + strand at 353.189 kb on - strand at 353.189 kb on - strand at 353.189 kb on - strand at 353.235 kb on - strand at 353.235 kb on - strand at 353.235 kb on - strand at 353.341 kb on - strand at 353.530 kb on - strand at 353.530 kb on - strand at 353.603 kb on + strand at 353.603 kb on + strand at 353.606 kb on + strand at 353.606 kb on + strand at 353.606 kb on + strand at 353.607 kb on - strand at 353.607 kb on - strand at 353.607 kb on - strand at 353.700 kb on - strand at 353.700 kb on - strand at 353.787 kb on + strand at 353.788 kb on - strand at 353.809 kb on + strand at 353.809 kb on + strand at 353.809 kb on + strand at 353.809 kb on + strand at 353.810 kb on - strand at 353.818 kb on + strand at 353.818 kb on + strand at 353.819 kb on - strand at 353.819 kb on - strand at 353.819 kb on - strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.169 kb on + strand at 354.169 kb on + strand at 354.170 kb on - strand at 354.201 kb on + strand at 354.202 kb on - strand at 354.202 kb on - strand at 354.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 351,663 + ABZR87_RS01675 0.75 +0.8 351,664 - ABZR87_RS01675 0.75 +0.8 351,741 + ABZR87_RS01675 0.83 -0.3 351,741 + ABZR87_RS01675 0.83 -1.2 351,891 + +0.4 351,892 - -0.7 351,897 + +0.5 351,898 - +0.6 351,921 + +0.3 351,921 + -1.6 351,921 + -0.5 351,921 + +0.7 351,921 + +0.9 351,922 - -0.3 351,922 - -0.6 351,922 - -0.6 351,922 - -0.2 351,922 - -0.2 351,922 - -0.3 352,002 + ABZR87_RS01680 0.20 +0.5 352,002 + ABZR87_RS01680 0.20 -1.0 352,002 + ABZR87_RS01680 0.20 -0.3 352,002 + ABZR87_RS01680 0.20 -0.5 352,002 + ABZR87_RS01680 0.20 +0.9 352,003 - ABZR87_RS01680 0.20 -0.2 352,003 - ABZR87_RS01680 0.20 -0.2 352,003 - ABZR87_RS01680 0.20 -0.2 352,003 - ABZR87_RS01680 0.20 -0.6 352,003 - ABZR87_RS01680 0.20 -1.3 352,003 - ABZR87_RS01680 0.20 +0.3 352,004 + ABZR87_RS01680 0.20 +0.3 352,004 + ABZR87_RS01680 0.20 -0.7 352,004 + ABZR87_RS01680 0.20 -0.5 352,005 - ABZR87_RS01680 0.21 +0.5 352,005 - ABZR87_RS01680 0.21 -0.6 352,005 - ABZR87_RS01680 0.21 +0.3 352,051 + ABZR87_RS01680 0.30 +0.7 352,051 + ABZR87_RS01680 0.30 +0.7 352,052 - ABZR87_RS01680 0.31 +0.2 352,396 - -0.2 352,396 - +0.5 352,450 + +0.3 352,451 - +0.0 352,451 - -0.3 352,467 + -0.5 352,467 + -0.5 352,467 + +0.0 352,467 + -1.2 352,467 + -0.2 352,468 - -0.0 352,468 - -0.2 352,468 - -1.3 352,468 - -0.2 352,554 + -1.1 352,629 + -2.3 352,629 + +0.4 352,629 + +0.3 352,630 - -1.5 352,630 - -2.5 352,630 - -0.8 352,630 - +0.8 352,630 - -1.2 353,059 + ABZR87_RS01685 0.75 -2.7 353,059 + ABZR87_RS01685 0.75 -2.2 353,059 + ABZR87_RS01685 0.75 -1.2 353,059 + ABZR87_RS01685 0.75 +0.3 353,059 + ABZR87_RS01685 0.75 -2.9 353,059 + ABZR87_RS01685 0.75 -3.3 353,059 + ABZR87_RS01685 0.75 -0.3 353,060 - ABZR87_RS01685 0.75 -0.5 353,060 - ABZR87_RS01685 0.75 -1.2 353,060 - ABZR87_RS01685 0.75 -2.1 353,060 - ABZR87_RS01685 0.75 -2.4 353,060 - ABZR87_RS01685 0.75 -3.2 353,060 - ABZR87_RS01685 0.75 -1.3 353,060 - ABZR87_RS01685 0.75 +0.3 353,089 + ABZR87_RS01685 0.80 -3.2 353,188 + -0.9 353,189 - -0.8 353,189 - -2.3 353,189 - -1.7 353,235 - -0.8 353,235 - -2.3 353,235 - +0.3 353,341 - -0.5 353,530 - +0.2 353,530 - +0.3 353,603 + -2.1 353,603 + -1.1 353,606 + -0.1 353,606 + -2.4 353,606 + -1.7 353,607 - +0.3 353,607 - -0.1 353,607 - -0.8 353,700 - +0.7 353,700 - -0.9 353,787 + -2.9 353,788 - -2.2 353,809 + -1.8 353,809 + -1.6 353,809 + -2.5 353,809 + -0.3 353,810 - +0.7 353,818 + -1.3 353,818 + -0.2 353,819 - +0.1 353,819 - +0.0 353,819 - +1.1 354,125 + -1.2 354,125 + -1.3 354,125 + -0.2 354,125 + -1.0 354,125 + -0.8 354,125 + -0.5 354,125 + -0.5 354,125 + -2.4 354,126 - -0.1 354,126 - -0.6 354,126 - -0.1 354,126 - -0.3 354,126 - +0.8 354,126 - +0.4 354,126 - -0.2 354,126 - -1.3 354,169 + -1.4 354,169 + +1.3 354,170 - +0.5 354,201 + +0.3 354,202 - +0.9 354,202 - -0.2 354,202 - -0.7
Or see this region's nucleotide sequence