Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01665

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01655 and ABZR87_RS01660 overlap by 4 nucleotidesABZR87_RS01660 and ABZR87_RS01665 are separated by 96 nucleotidesABZR87_RS01665 and ABZR87_RS01670 are separated by 120 nucleotidesABZR87_RS01670 and ABZR87_RS01675 are separated by 92 nucleotides ABZR87_RS01655: ABZR87_RS01655 - acetyl-CoA carboxylase biotin carboxylase subunit, at 346,442 to 347,809 _RS01655 ABZR87_RS01660: ABZR87_RS01660 - 50S ribosomal protein L11 methyltransferase, at 347,806 to 348,702 _RS01660 ABZR87_RS01665: ABZR87_RS01665 - DUF3426 domain-containing protein, at 348,799 to 350,250 _RS01665 ABZR87_RS01670: ABZR87_RS01670 - thiol peroxidase, at 350,371 to 350,871 _RS01670 ABZR87_RS01675: ABZR87_RS01675 - carbohydrate kinase family protein, at 350,964 to 351,899 _RS01675 Position (kb) 348 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2 3at 348.079 kb on + strand, within ABZR87_RS01660at 348.079 kb on + strand, within ABZR87_RS01660at 348.079 kb on + strand, within ABZR87_RS01660at 348.079 kb on + strand, within ABZR87_RS01660at 348.080 kb on - strand, within ABZR87_RS01660at 348.147 kb on + strand, within ABZR87_RS01660at 348.147 kb on + strand, within ABZR87_RS01660at 348.147 kb on + strand, within ABZR87_RS01660at 348.148 kb on - strand, within ABZR87_RS01660at 348.148 kb on - strand, within ABZR87_RS01660at 348.319 kb on + strand, within ABZR87_RS01660at 348.422 kb on - strand, within ABZR87_RS01660at 348.422 kb on - strand, within ABZR87_RS01660at 348.625 kb on + strandat 348.625 kb on + strandat 348.626 kb on - strandat 348.701 kb on - strandat 348.764 kb on + strandat 348.764 kb on + strandat 348.765 kb on - strandat 348.959 kb on + strand, within ABZR87_RS01665at 348.959 kb on + strand, within ABZR87_RS01665at 348.960 kb on - strand, within ABZR87_RS01665at 348.960 kb on - strand, within ABZR87_RS01665at 348.960 kb on - strand, within ABZR87_RS01665at 349.253 kb on + strand, within ABZR87_RS01665at 349.254 kb on - strand, within ABZR87_RS01665at 349.254 kb on - strand, within ABZR87_RS01665at 349.271 kb on + strand, within ABZR87_RS01665at 349.272 kb on - strand, within ABZR87_RS01665at 349.400 kb on + strand, within ABZR87_RS01665at 349.517 kb on + strand, within ABZR87_RS01665at 349.517 kb on + strand, within ABZR87_RS01665at 349.518 kb on - strand, within ABZR87_RS01665at 349.569 kb on + strand, within ABZR87_RS01665at 349.569 kb on + strand, within ABZR87_RS01665at 349.999 kb on + strand, within ABZR87_RS01665at 350.000 kb on - strand, within ABZR87_RS01665at 350.000 kb on - strand, within ABZR87_RS01665at 350.000 kb on - strand, within ABZR87_RS01665at 350.000 kb on - strand, within ABZR87_RS01665at 350.000 kb on - strand, within ABZR87_RS01665at 350.000 kb on - strand, within ABZR87_RS01665at 350.122 kb on + strandat 350.123 kb on - strandat 350.123 kb on - strandat 350.123 kb on - strandat 350.123 kb on - strandat 350.146 kb on + strandat 350.146 kb on + strandat 350.146 kb on + strandat 350.146 kb on + strandat 350.146 kb on + strandat 350.147 kb on - strandat 350.147 kb on - strandat 350.147 kb on - strandat 350.147 kb on - strandat 350.180 kb on + strandat 350.181 kb on - strandat 350.266 kb on + strandat 350.267 kb on - strandat 350.364 kb on + strandat 350.364 kb on + strandat 350.365 kb on - strandat 350.365 kb on - strandat 350.595 kb on + strand, within ABZR87_RS01670at 350.719 kb on + strand, within ABZR87_RS01670at 350.803 kb on + strand, within ABZR87_RS01670at 350.803 kb on + strand, within ABZR87_RS01670at 350.804 kb on - strand, within ABZR87_RS01670at 350.842 kb on + strandat 350.842 kb on + strandat 350.842 kb on + strandat 350.842 kb on + strandat 350.842 kb on + strandat 350.842 kb on + strandat 350.843 kb on - strandat 350.843 kb on - strandat 350.843 kb on - strandat 350.843 kb on - strandat 350.869 kb on + strandat 350.869 kb on + strandat 350.869 kb on + strandat 350.870 kb on - strandat 350.870 kb on - strandat 350.870 kb on - strandat 350.870 kb on - strandat 350.947 kb on - strandat 350.947 kb on - strandat 350.947 kb on - strandat 350.947 kb on - strandat 350.963 kb on + strandat 350.963 kb on + strandat 350.995 kb on - strandat 351.127 kb on - strand, within ABZR87_RS01675at 351.192 kb on + strand, within ABZR87_RS01675at 351.233 kb on + strand, within ABZR87_RS01675at 351.234 kb on - strand, within ABZR87_RS01675

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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348,079 + ABZR87_RS01660 0.30 -0.6
348,079 + ABZR87_RS01660 0.30 -0.9
348,079 + ABZR87_RS01660 0.30 -0.8
348,079 + ABZR87_RS01660 0.30 +0.7
348,080 - ABZR87_RS01660 0.31 +0.6
348,147 + ABZR87_RS01660 0.38 -1.4
348,147 + ABZR87_RS01660 0.38 +0.1
348,147 + ABZR87_RS01660 0.38 -0.4
348,148 - ABZR87_RS01660 0.38 +0.7
348,148 - ABZR87_RS01660 0.38 +0.3
348,319 + ABZR87_RS01660 0.57 -1.0
348,422 - ABZR87_RS01660 0.69 -0.9
348,422 - ABZR87_RS01660 0.69 +1.0
348,625 + +0.2
348,625 + +0.2
348,626 - -0.2
348,701 - -0.4
348,764 + +0.1
348,764 + +0.8
348,765 - +2.8
348,959 + ABZR87_RS01665 0.11 +0.6
348,959 + ABZR87_RS01665 0.11 +0.8
348,960 - ABZR87_RS01665 0.11 +0.2
348,960 - ABZR87_RS01665 0.11 +1.6
348,960 - ABZR87_RS01665 0.11 +1.2
349,253 + ABZR87_RS01665 0.31 +1.0
349,254 - ABZR87_RS01665 0.31 +1.4
349,254 - ABZR87_RS01665 0.31 +0.7
349,271 + ABZR87_RS01665 0.33 +1.2
349,272 - ABZR87_RS01665 0.33 +1.8
349,400 + ABZR87_RS01665 0.41 +1.0
349,517 + ABZR87_RS01665 0.49 +1.5
349,517 + ABZR87_RS01665 0.49 +0.9
349,518 - ABZR87_RS01665 0.50 +1.7
349,569 + ABZR87_RS01665 0.53 +1.6
349,569 + ABZR87_RS01665 0.53 +0.7
349,999 + ABZR87_RS01665 0.83 -1.2
350,000 - ABZR87_RS01665 0.83 -0.2
350,000 - ABZR87_RS01665 0.83 +1.9
350,000 - ABZR87_RS01665 0.83 +1.3
350,000 - ABZR87_RS01665 0.83 +1.6
350,000 - ABZR87_RS01665 0.83 +1.4
350,000 - ABZR87_RS01665 0.83 +2.6
350,122 + +1.5
350,123 - +1.0
350,123 - +1.1
350,123 - +1.5
350,123 - +1.3
350,146 + +1.1
350,146 + +1.1
350,146 + +1.0
350,146 + +1.4
350,146 + +0.8
350,147 - +1.8
350,147 - +1.7
350,147 - +0.7
350,147 - +1.7
350,180 + +1.3
350,181 - +1.2
350,266 + +0.7
350,267 - +0.3
350,364 + -0.2
350,364 + +1.8
350,365 - -0.2
350,365 - +0.5
350,595 + ABZR87_RS01670 0.45 +0.6
350,719 + ABZR87_RS01670 0.69 +0.8
350,803 + ABZR87_RS01670 0.86 -1.8
350,803 + ABZR87_RS01670 0.86 +0.7
350,804 - ABZR87_RS01670 0.86 -0.9
350,842 + -0.2
350,842 + -0.8
350,842 + -1.4
350,842 + +0.2
350,842 + +0.9
350,842 + +0.8
350,843 - +1.9
350,843 - -0.9
350,843 - +0.1
350,843 - -0.9
350,869 + +0.4
350,869 + -0.1
350,869 + -1.0
350,870 - -1.0
350,870 - +0.2
350,870 - -0.3
350,870 - -0.9
350,947 - -0.5
350,947 - +1.8
350,947 - -0.2
350,947 - -1.7
350,963 + -0.5
350,963 + +1.5
350,995 - -0.5
351,127 - ABZR87_RS01675 0.17 +2.6
351,192 + ABZR87_RS01675 0.24 +1.8
351,233 + ABZR87_RS01675 0.29 +1.2
351,234 - ABZR87_RS01675 0.29 +0.8

Or see this region's nucleotide sequence