Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01600 and ABZR87_RS01605 are separated by 20 nucleotides ABZR87_RS01605 and ABZR87_RS01610 are separated by 11 nucleotides ABZR87_RS01610 and ABZR87_RS01615 are separated by 52 nucleotides
ABZR87_RS01600: ABZR87_RS01600 - monofunctional biosynthetic peptidoglycan transglycosylase, at 336,246 to 336,950
_RS01600
ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888
_RS01605
ABZR87_RS01610: ABZR87_RS01610 - energy transducer TonB, at 337,900 to 338,814
_RS01610
ABZR87_RS01615: ABZR87_RS01615 - RNB domain-containing ribonuclease, at 338,867 to 340,963
_RS01615
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 336.931 kb on + strand at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.174 kb on - strand, within ABZR87_RS01605 at 337.174 kb on - strand, within ABZR87_RS01605 at 337.185 kb on + strand, within ABZR87_RS01605 at 337.185 kb on + strand, within ABZR87_RS01605 at 337.185 kb on + strand, within ABZR87_RS01605 at 337.186 kb on - strand, within ABZR87_RS01605 at 337.302 kb on + strand, within ABZR87_RS01605 at 337.632 kb on + strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.633 kb on - strand, within ABZR87_RS01605 at 337.728 kb on + strand, within ABZR87_RS01605 at 337.740 kb on + strand, within ABZR87_RS01605 at 337.827 kb on + strand at 337.827 kb on + strand at 337.827 kb on + strand at 337.828 kb on - strand at 337.828 kb on - strand at 337.828 kb on - strand at 337.828 kb on - strand at 338.096 kb on + strand, within ABZR87_RS01610 at 338.097 kb on - strand, within ABZR87_RS01610 at 338.112 kb on - strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.163 kb on - strand, within ABZR87_RS01610 at 338.163 kb on - strand, within ABZR87_RS01610 at 338.234 kb on + strand, within ABZR87_RS01610 at 338.234 kb on + strand, within ABZR87_RS01610 at 338.234 kb on + strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.237 kb on + strand, within ABZR87_RS01610 at 338.246 kb on + strand, within ABZR87_RS01610 at 338.247 kb on - strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.304 kb on - strand, within ABZR87_RS01610 at 338.304 kb on - strand, within ABZR87_RS01610 at 338.304 kb on - strand, within ABZR87_RS01610 at 338.458 kb on - strand, within ABZR87_RS01610 at 338.576 kb on + strand, within ABZR87_RS01610 at 338.576 kb on + strand, within ABZR87_RS01610 at 338.577 kb on - strand, within ABZR87_RS01610 at 338.577 kb on - strand, within ABZR87_RS01610 at 338.689 kb on - strand, within ABZR87_RS01610 at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.865 kb on - strand at 338.865 kb on - strand at 338.868 kb on + strand at 338.868 kb on + strand at 338.868 kb on + strand at 338.869 kb on - strand at 338.878 kb on + strand at 339.718 kb on - strand, within ABZR87_RS01615 at 339.718 kb on - strand, within ABZR87_RS01615
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 336,931 + +0.4 337,173 + ABZR87_RS01605 0.22 -0.8 337,173 + ABZR87_RS01605 0.22 +0.5 337,173 + ABZR87_RS01605 0.22 +0.0 337,173 + ABZR87_RS01605 0.22 -0.1 337,173 + ABZR87_RS01605 0.22 -0.0 337,173 + ABZR87_RS01605 0.22 +0.6 337,173 + ABZR87_RS01605 0.22 +1.4 337,173 + ABZR87_RS01605 0.22 -0.0 337,173 + ABZR87_RS01605 0.22 +0.6 337,173 + ABZR87_RS01605 0.22 -0.2 337,174 - ABZR87_RS01605 0.22 +0.5 337,174 - ABZR87_RS01605 0.22 -0.2 337,185 + ABZR87_RS01605 0.23 +0.2 337,185 + ABZR87_RS01605 0.23 -0.1 337,185 + ABZR87_RS01605 0.23 +0.6 337,186 - ABZR87_RS01605 0.23 +0.8 337,302 + ABZR87_RS01605 0.36 -0.9 337,632 + ABZR87_RS01605 0.72 +0.2 337,633 - ABZR87_RS01605 0.72 -0.1 337,633 - ABZR87_RS01605 0.72 -0.5 337,633 - ABZR87_RS01605 0.72 +1.2 337,633 - ABZR87_RS01605 0.72 -2.9 337,633 - ABZR87_RS01605 0.72 -0.1 337,728 + ABZR87_RS01605 0.82 +0.7 337,740 + ABZR87_RS01605 0.84 +0.2 337,827 + -1.1 337,827 + -0.5 337,827 + -0.1 337,828 - -0.8 337,828 - +0.1 337,828 - -0.0 337,828 - +0.1 338,096 + ABZR87_RS01610 0.21 +0.9 338,097 - ABZR87_RS01610 0.22 +1.7 338,112 - ABZR87_RS01610 0.23 +1.6 338,162 + ABZR87_RS01610 0.29 +2.2 338,162 + ABZR87_RS01610 0.29 +1.4 338,162 + ABZR87_RS01610 0.29 +1.2 338,162 + ABZR87_RS01610 0.29 +1.2 338,163 - ABZR87_RS01610 0.29 +1.1 338,163 - ABZR87_RS01610 0.29 +1.5 338,234 + ABZR87_RS01610 0.37 +1.3 338,234 + ABZR87_RS01610 0.37 +0.8 338,234 + ABZR87_RS01610 0.37 +1.1 338,235 - ABZR87_RS01610 0.37 +1.0 338,235 - ABZR87_RS01610 0.37 +1.6 338,235 - ABZR87_RS01610 0.37 +0.8 338,235 - ABZR87_RS01610 0.37 +1.5 338,235 - ABZR87_RS01610 0.37 +0.9 338,237 + ABZR87_RS01610 0.37 +1.3 338,246 + ABZR87_RS01610 0.38 +1.1 338,247 - ABZR87_RS01610 0.38 +2.0 338,303 + ABZR87_RS01610 0.44 +1.3 338,303 + ABZR87_RS01610 0.44 +1.3 338,303 + ABZR87_RS01610 0.44 +0.8 338,303 + ABZR87_RS01610 0.44 +1.7 338,304 - ABZR87_RS01610 0.44 +1.1 338,304 - ABZR87_RS01610 0.44 +0.9 338,304 - ABZR87_RS01610 0.44 -0.5 338,458 - ABZR87_RS01610 0.61 +1.2 338,576 + ABZR87_RS01610 0.74 +1.9 338,576 + ABZR87_RS01610 0.74 -0.3 338,577 - ABZR87_RS01610 0.74 +1.8 338,577 - ABZR87_RS01610 0.74 +3.0 338,689 - ABZR87_RS01610 0.86 +1.4 338,864 + +0.2 338,864 + -0.9 338,864 + -1.1 338,864 + -0.5 338,864 + +0.3 338,864 + -0.6 338,864 + +0.1 338,864 + +0.4 338,864 + +1.4 338,864 + +0.1 338,864 + +0.4 338,865 - +2.2 338,865 - +0.8 338,868 + +1.2 338,868 + +1.4 338,868 + -0.1 338,869 - -0.8 338,878 + +0.8 339,718 - ABZR87_RS01615 0.41 -0.5 339,718 - ABZR87_RS01615 0.41 -1.3
Or see this region's nucleotide sequence