Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01270

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01265 and ABZR87_RS01270 are separated by 17 nucleotidesABZR87_RS01270 and ABZR87_RS01275 are separated by 131 nucleotides ABZR87_RS01265: ABZR87_RS01265 - sensor domain-containing diguanylate cyclase, at 262,438 to 263,457 _RS01265 ABZR87_RS01270: ABZR87_RS01270 - ATP-dependent DNA helicase RecG, at 263,475 to 265,622 _RS01270 ABZR87_RS01275: ABZR87_RS01275 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 265,754 to 266,815 _RS01275 Position (kb) 263 264 265 266Strain fitness (log2 ratio) -2 -1 0 1 2at 262.624 kb on + strand, within ABZR87_RS01265at 262.624 kb on + strand, within ABZR87_RS01265at 262.624 kb on + strand, within ABZR87_RS01265at 262.625 kb on - strand, within ABZR87_RS01265at 262.625 kb on - strand, within ABZR87_RS01265at 262.625 kb on - strand, within ABZR87_RS01265at 262.960 kb on + strand, within ABZR87_RS01265at 262.960 kb on + strand, within ABZR87_RS01265at 262.960 kb on + strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.301 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.324 kb on + strand, within ABZR87_RS01265at 263.324 kb on + strand, within ABZR87_RS01265at 263.325 kb on - strand, within ABZR87_RS01265at 263.413 kb on + strandat 263.413 kb on + strandat 263.413 kb on + strandat 263.413 kb on + strandat 263.413 kb on + strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.441 kb on + strandat 263.441 kb on + strandat 263.441 kb on + strandat 263.442 kb on - strandat 263.442 kb on - strandat 263.476 kb on + strandat 263.488 kb on + strandat 263.489 kb on - strandat 263.489 kb on - strandat 263.764 kb on + strand, within ABZR87_RS01270at 263.764 kb on + strand, within ABZR87_RS01270at 263.764 kb on + strand, within ABZR87_RS01270at 263.764 kb on + strand, within ABZR87_RS01270at 263.765 kb on - strand, within ABZR87_RS01270at 263.765 kb on - strand, within ABZR87_RS01270at 263.765 kb on - strand, within ABZR87_RS01270at 263.909 kb on + strand, within ABZR87_RS01270at 263.910 kb on - strand, within ABZR87_RS01270at 263.997 kb on + strand, within ABZR87_RS01270at 263.998 kb on - strand, within ABZR87_RS01270at 263.998 kb on - strand, within ABZR87_RS01270at 264.098 kb on - strand, within ABZR87_RS01270at 264.127 kb on + strand, within ABZR87_RS01270at 264.127 kb on + strand, within ABZR87_RS01270at 264.127 kb on + strand, within ABZR87_RS01270at 264.127 kb on + strand, within ABZR87_RS01270at 264.128 kb on - strand, within ABZR87_RS01270at 264.235 kb on + strand, within ABZR87_RS01270at 264.235 kb on + strand, within ABZR87_RS01270at 264.235 kb on + strand, within ABZR87_RS01270at 264.236 kb on - strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270at 264.845 kb on + strand, within ABZR87_RS01270at 264.846 kb on - strand, within ABZR87_RS01270at 264.846 kb on - strand, within ABZR87_RS01270at 264.945 kb on + strand, within ABZR87_RS01270at 265.103 kb on - strand, within ABZR87_RS01270at 265.103 kb on - strand, within ABZR87_RS01270at 265.103 kb on - strand, within ABZR87_RS01270at 265.103 kb on - strand, within ABZR87_RS01270at 265.103 kb on - strand, within ABZR87_RS01270at 265.103 kb on - strand, within ABZR87_RS01270at 265.132 kb on + strand, within ABZR87_RS01270at 265.132 kb on + strand, within ABZR87_RS01270at 265.282 kb on + strand, within ABZR87_RS01270at 265.328 kb on + strand, within ABZR87_RS01270at 265.328 kb on + strand, within ABZR87_RS01270at 265.462 kb on + strandat 265.462 kb on + strandat 265.462 kb on + strandat 265.565 kb on + strandat 265.566 kb on - strandat 265.566 kb on - strandat 265.608 kb on - strandat 265.622 kb on + strandat 265.623 kb on - strandat 265.670 kb on + strandat 265.670 kb on + strandat 265.670 kb on + strandat 265.671 kb on - strandat 265.671 kb on - strandat 265.671 kb on - strandat 265.671 kb on - strandat 265.702 kb on + strandat 265.849 kb on - strandat 265.907 kb on + strand, within ABZR87_RS01275at 265.907 kb on + strand, within ABZR87_RS01275at 266.203 kb on + strand, within ABZR87_RS01275at 266.204 kb on + strand, within ABZR87_RS01275at 266.255 kb on + strand, within ABZR87_RS01275at 266.255 kb on + strand, within ABZR87_RS01275at 266.256 kb on - strand, within ABZR87_RS01275at 266.256 kb on - strand, within ABZR87_RS01275at 266.256 kb on - strand, within ABZR87_RS01275at 266.256 kb on - strand, within ABZR87_RS01275at 266.256 kb on - strand, within ABZR87_RS01275at 266.256 kb on - strand, within ABZR87_RS01275at 266.256 kb on - strand, within ABZR87_RS01275at 266.446 kb on + strand, within ABZR87_RS01275

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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262,624 + ABZR87_RS01265 0.18 +0.5
262,624 + ABZR87_RS01265 0.18 +0.6
262,624 + ABZR87_RS01265 0.18 +0.8
262,625 - ABZR87_RS01265 0.18 -0.1
262,625 - ABZR87_RS01265 0.18 +0.1
262,625 - ABZR87_RS01265 0.18 -0.3
262,960 + ABZR87_RS01265 0.51 +0.2
262,960 + ABZR87_RS01265 0.51 -0.5
262,960 + ABZR87_RS01265 0.51 -0.0
262,961 - ABZR87_RS01265 0.51 -0.3
262,961 - ABZR87_RS01265 0.51 -1.1
262,961 - ABZR87_RS01265 0.51 -0.5
262,961 - ABZR87_RS01265 0.51 -0.0
263,014 + ABZR87_RS01265 0.56 +0.6
263,014 + ABZR87_RS01265 0.56 +1.6
263,014 + ABZR87_RS01265 0.56 +0.4
263,014 + ABZR87_RS01265 0.56 +0.6
263,014 + ABZR87_RS01265 0.56 +0.7
263,015 - ABZR87_RS01265 0.57 +0.2
263,015 - ABZR87_RS01265 0.57 +1.4
263,015 - ABZR87_RS01265 0.57 -0.8
263,015 - ABZR87_RS01265 0.57 +0.4
263,301 + ABZR87_RS01265 0.85 +1.7
263,302 + ABZR87_RS01265 0.85 -0.6
263,302 + ABZR87_RS01265 0.85 -0.3
263,302 + ABZR87_RS01265 0.85 +0.5
263,302 + ABZR87_RS01265 0.85 +1.0
263,302 + ABZR87_RS01265 0.85 +0.2
263,302 + ABZR87_RS01265 0.85 -0.3
263,302 + ABZR87_RS01265 0.85 -0.1
263,302 + ABZR87_RS01265 0.85 -0.1
263,303 - ABZR87_RS01265 0.85 +1.5
263,303 - ABZR87_RS01265 0.85 -1.3
263,303 - ABZR87_RS01265 0.85 -0.9
263,303 - ABZR87_RS01265 0.85 +0.9
263,303 - ABZR87_RS01265 0.85 +0.2
263,303 - ABZR87_RS01265 0.85 +0.1
263,303 - ABZR87_RS01265 0.85 +2.0
263,303 - ABZR87_RS01265 0.85 +0.1
263,303 - ABZR87_RS01265 0.85 -0.7
263,303 - ABZR87_RS01265 0.85 -0.4
263,324 + ABZR87_RS01265 0.87 -0.3
263,324 + ABZR87_RS01265 0.87 -0.1
263,325 - ABZR87_RS01265 0.87 -0.5
263,413 + +0.1
263,413 + +0.4
263,413 + -0.4
263,413 + +0.1
263,413 + -0.5
263,414 - -1.2
263,414 - -0.1
263,414 - -0.1
263,414 - +0.2
263,414 - +0.0
263,414 - +0.0
263,414 - -0.4
263,414 - +0.5
263,414 - -0.3
263,414 - +2.1
263,441 + -1.1
263,441 + -0.3
263,441 + -1.4
263,442 - +0.4
263,442 - -0.1
263,476 + -1.4
263,488 + +0.1
263,489 - -0.8
263,489 - -0.0
263,764 + ABZR87_RS01270 0.13 -2.0
263,764 + ABZR87_RS01270 0.13 -1.6
263,764 + ABZR87_RS01270 0.13 -1.8
263,764 + ABZR87_RS01270 0.13 -0.6
263,765 - ABZR87_RS01270 0.14 +0.8
263,765 - ABZR87_RS01270 0.14 -1.3
263,765 - ABZR87_RS01270 0.14 -1.9
263,909 + ABZR87_RS01270 0.20 -1.0
263,910 - ABZR87_RS01270 0.20 -1.1
263,997 + ABZR87_RS01270 0.24 -0.1
263,998 - ABZR87_RS01270 0.24 +0.0
263,998 - ABZR87_RS01270 0.24 +0.6
264,098 - ABZR87_RS01270 0.29 +0.3
264,127 + ABZR87_RS01270 0.30 -0.3
264,127 + ABZR87_RS01270 0.30 -1.2
264,127 + ABZR87_RS01270 0.30 -0.9
264,127 + ABZR87_RS01270 0.30 -0.7
264,128 - ABZR87_RS01270 0.30 +0.6
264,235 + ABZR87_RS01270 0.35 -1.7
264,235 + ABZR87_RS01270 0.35 -1.0
264,235 + ABZR87_RS01270 0.35 +0.0
264,236 - ABZR87_RS01270 0.35 -0.9
264,238 + ABZR87_RS01270 0.36 +0.4
264,238 + ABZR87_RS01270 0.36 +0.3
264,238 + ABZR87_RS01270 0.36 -2.0
264,238 + ABZR87_RS01270 0.36 -0.1
264,238 + ABZR87_RS01270 0.36 +0.6
264,238 + ABZR87_RS01270 0.36 -1.4
264,238 + ABZR87_RS01270 0.36 -0.5
264,238 + ABZR87_RS01270 0.36 -1.8
264,239 - ABZR87_RS01270 0.36 -0.8
264,239 - ABZR87_RS01270 0.36 -1.5
264,239 - ABZR87_RS01270 0.36 +0.2
264,239 - ABZR87_RS01270 0.36 -0.2
264,239 - ABZR87_RS01270 0.36 +0.2
264,845 + ABZR87_RS01270 0.64 -0.6
264,846 - ABZR87_RS01270 0.64 +1.1
264,846 - ABZR87_RS01270 0.64 -0.6
264,945 + ABZR87_RS01270 0.68 -0.6
265,103 - ABZR87_RS01270 0.76 +0.1
265,103 - ABZR87_RS01270 0.76 -1.3
265,103 - ABZR87_RS01270 0.76 -0.3
265,103 - ABZR87_RS01270 0.76 +1.2
265,103 - ABZR87_RS01270 0.76 +0.2
265,103 - ABZR87_RS01270 0.76 -0.8
265,132 + ABZR87_RS01270 0.77 -2.4
265,132 + ABZR87_RS01270 0.77 -0.8
265,282 + ABZR87_RS01270 0.84 -2.1
265,328 + ABZR87_RS01270 0.86 -1.2
265,328 + ABZR87_RS01270 0.86 -1.6
265,462 + -0.6
265,462 + -0.3
265,462 + -0.3
265,565 + +0.5
265,566 - -0.6
265,566 - +0.1
265,608 - +0.2
265,622 + -1.6
265,623 - -0.1
265,670 + -0.5
265,670 + +0.0
265,670 + -0.2
265,671 - +1.0
265,671 - +2.1
265,671 - -0.1
265,671 - +0.4
265,702 + -2.0
265,849 - +1.7
265,907 + ABZR87_RS01275 0.14 +0.8
265,907 + ABZR87_RS01275 0.14 -0.1
266,203 + ABZR87_RS01275 0.42 +0.3
266,204 + ABZR87_RS01275 0.42 +0.1
266,255 + ABZR87_RS01275 0.47 +0.1
266,255 + ABZR87_RS01275 0.47 +0.6
266,256 - ABZR87_RS01275 0.47 +0.6
266,256 - ABZR87_RS01275 0.47 -1.1
266,256 - ABZR87_RS01275 0.47 -0.6
266,256 - ABZR87_RS01275 0.47 -1.6
266,256 - ABZR87_RS01275 0.47 +0.3
266,256 - ABZR87_RS01275 0.47 -0.7
266,256 - ABZR87_RS01275 0.47 +0.8
266,446 + ABZR87_RS01275 0.65 -1.2

Or see this region's nucleotide sequence