Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01245 and ABZR87_RS01250 are separated by 173 nucleotides ABZR87_RS01250 and ABZR87_RS01255 are separated by 314 nucleotides ABZR87_RS01255 and ABZR87_RS01260 are separated by 152 nucleotides
ABZR87_RS01245: ABZR87_RS01245 - Dps family protein, at 258,783 to 259,283
_RS01245
ABZR87_RS01250: ABZR87_RS01250 - hypothetical protein, at 259,457 to 259,699
_RS01250
ABZR87_RS01255: ABZR87_RS01255 - LysR substrate-binding domain-containing protein, at 260,014 to 260,961
_RS01255
ABZR87_RS01260: ABZR87_RS01260 - metallophosphoesterase, at 261,114 to 262,280
_RS01260
Position (kb)
260
261 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.163 kb on - strand, within ABZR87_RS01245 at 259.171 kb on + strand, within ABZR87_RS01245 at 259.171 kb on + strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.176 kb on - strand, within ABZR87_RS01245 at 259.176 kb on - strand, within ABZR87_RS01245 at 259.295 kb on + strand at 259.296 kb on - strand at 259.357 kb on - strand at 259.412 kb on + strand at 259.412 kb on + strand at 259.413 kb on - strand at 259.477 kb on + strand at 259.477 kb on + strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.498 kb on + strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.521 kb on - strand, within ABZR87_RS01250 at 259.792 kb on + strand at 259.792 kb on + strand at 259.792 kb on + strand at 259.793 kb on - strand at 259.793 kb on - strand at 259.965 kb on + strand at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.218 kb on - strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.384 kb on - strand, within ABZR87_RS01255 at 260.384 kb on - strand, within ABZR87_RS01255 at 260.480 kb on + strand, within ABZR87_RS01255 at 260.651 kb on + strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.666 kb on + strand, within ABZR87_RS01255 at 260.666 kb on + strand, within ABZR87_RS01255 at 260.667 kb on - strand, within ABZR87_RS01255 at 260.667 kb on - strand, within ABZR87_RS01255 at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.989 kb on + strand at 260.990 kb on - strand at 261.131 kb on + strand at 261.131 kb on + strand at 261.132 kb on - strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.213 kb on - strand at 261.213 kb on - strand at 261.286 kb on + strand, within ABZR87_RS01260 at 261.453 kb on + strand, within ABZR87_RS01260 at 261.454 kb on - strand, within ABZR87_RS01260 at 261.513 kb on + strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.518 kb on - strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 259,084 + ABZR87_RS01245 0.60 +0.8 259,084 + ABZR87_RS01245 0.60 +2.8 259,084 + ABZR87_RS01245 0.60 -0.5 259,084 + ABZR87_RS01245 0.60 +0.0 259,084 + ABZR87_RS01245 0.60 +0.8 259,085 - ABZR87_RS01245 0.60 -0.6 259,085 - ABZR87_RS01245 0.60 -0.6 259,085 - ABZR87_RS01245 0.60 -1.0 259,085 - ABZR87_RS01245 0.60 +0.7 259,085 - ABZR87_RS01245 0.60 +0.5 259,147 + ABZR87_RS01245 0.73 +1.8 259,147 + ABZR87_RS01245 0.73 -0.2 259,147 + ABZR87_RS01245 0.73 -0.2 259,147 + ABZR87_RS01245 0.73 +1.8 259,147 + ABZR87_RS01245 0.73 -0.2 259,148 - ABZR87_RS01245 0.73 +0.3 259,148 - ABZR87_RS01245 0.73 +0.3 259,148 - ABZR87_RS01245 0.73 -0.3 259,148 - ABZR87_RS01245 0.73 +0.5 259,162 + ABZR87_RS01245 0.76 +0.8 259,162 + ABZR87_RS01245 0.76 +0.2 259,162 + ABZR87_RS01245 0.76 +1.8 259,163 - ABZR87_RS01245 0.76 -0.5 259,171 + ABZR87_RS01245 0.77 +1.8 259,171 + ABZR87_RS01245 0.77 +0.4 259,172 - ABZR87_RS01245 0.78 -0.9 259,172 - ABZR87_RS01245 0.78 -0.6 259,172 - ABZR87_RS01245 0.78 -1.0 259,176 - ABZR87_RS01245 0.78 -0.5 259,176 - ABZR87_RS01245 0.78 -0.3 259,295 + +0.8 259,296 - +0.9 259,357 - -1.1 259,412 + -0.6 259,412 + -0.3 259,413 - -0.2 259,477 + -0.7 259,477 + +1.8 259,478 - -0.3 259,478 - -0.5 259,478 - -0.5 259,478 - -0.3 259,498 + ABZR87_RS01250 0.17 +0.6 259,499 - ABZR87_RS01250 0.17 -0.0 259,499 - ABZR87_RS01250 0.17 -0.0 259,499 - ABZR87_RS01250 0.17 +0.4 259,499 - ABZR87_RS01250 0.17 +1.1 259,520 + ABZR87_RS01250 0.26 -0.1 259,520 + ABZR87_RS01250 0.26 -0.6 259,520 + ABZR87_RS01250 0.26 +2.2 259,521 - ABZR87_RS01250 0.26 +0.2 259,792 + -0.4 259,792 + +0.3 259,792 + +0.9 259,793 - +0.2 259,793 - +0.0 259,965 + -0.5 260,171 + ABZR87_RS01255 0.17 -2.5 260,171 + ABZR87_RS01255 0.17 -0.6 260,171 + ABZR87_RS01255 0.17 -0.9 260,171 + ABZR87_RS01255 0.17 -0.7 260,171 + ABZR87_RS01255 0.17 -2.6 260,171 + ABZR87_RS01255 0.17 -0.4 260,172 - ABZR87_RS01255 0.17 -2.7 260,172 - ABZR87_RS01255 0.17 -1.2 260,172 - ABZR87_RS01255 0.17 -0.6 260,172 - ABZR87_RS01255 0.17 -0.9 260,172 - ABZR87_RS01255 0.17 -0.2 260,172 - ABZR87_RS01255 0.17 +1.0 260,217 + ABZR87_RS01255 0.21 -2.3 260,217 + ABZR87_RS01255 0.21 +0.2 260,217 + ABZR87_RS01255 0.21 -0.6 260,217 + ABZR87_RS01255 0.21 -2.2 260,218 - ABZR87_RS01255 0.22 -1.1 260,256 + ABZR87_RS01255 0.26 +1.4 260,256 + ABZR87_RS01255 0.26 -0.2 260,256 + ABZR87_RS01255 0.26 -1.8 260,256 + ABZR87_RS01255 0.26 -0.8 260,256 + ABZR87_RS01255 0.26 -1.3 260,256 + ABZR87_RS01255 0.26 -0.7 260,256 + ABZR87_RS01255 0.26 -0.5 260,256 + ABZR87_RS01255 0.26 +0.7 260,256 + ABZR87_RS01255 0.26 -0.3 260,256 + ABZR87_RS01255 0.26 -0.8 260,256 + ABZR87_RS01255 0.26 -1.6 260,256 + ABZR87_RS01255 0.26 +0.0 260,256 + ABZR87_RS01255 0.26 -0.7 260,256 + ABZR87_RS01255 0.26 -0.5 260,257 - ABZR87_RS01255 0.26 -1.3 260,257 - ABZR87_RS01255 0.26 -2.6 260,257 - ABZR87_RS01255 0.26 -0.2 260,257 - ABZR87_RS01255 0.26 -0.6 260,257 - ABZR87_RS01255 0.26 -1.0 260,257 - ABZR87_RS01255 0.26 -1.0 260,257 - ABZR87_RS01255 0.26 -1.1 260,257 - ABZR87_RS01255 0.26 -2.2 260,257 - ABZR87_RS01255 0.26 -1.3 260,257 - ABZR87_RS01255 0.26 -1.0 260,257 - ABZR87_RS01255 0.26 -1.1 260,257 - ABZR87_RS01255 0.26 -0.8 260,257 - ABZR87_RS01255 0.26 -1.0 260,257 - ABZR87_RS01255 0.26 +0.8 260,257 - ABZR87_RS01255 0.26 -1.1 260,384 - ABZR87_RS01255 0.39 -1.0 260,384 - ABZR87_RS01255 0.39 -0.5 260,480 + ABZR87_RS01255 0.49 +0.8 260,651 + ABZR87_RS01255 0.67 +0.5 260,652 - ABZR87_RS01255 0.67 -1.6 260,652 - ABZR87_RS01255 0.67 -1.6 260,652 - ABZR87_RS01255 0.67 -1.5 260,666 + ABZR87_RS01255 0.69 -1.0 260,666 + ABZR87_RS01255 0.69 -1.2 260,667 - ABZR87_RS01255 0.69 -1.5 260,667 - ABZR87_RS01255 0.69 -0.8 260,939 + +0.2 260,939 + -0.0 260,939 + +0.5 260,939 + +0.7 260,939 + +0.5 260,939 + -2.9 260,939 + +2.8 260,939 + -1.3 260,939 + +0.8 260,939 + +1.3 260,939 + -0.2 260,940 - -0.6 260,940 - -0.6 260,940 - -0.4 260,940 - -1.0 260,940 - -1.1 260,940 - -0.9 260,940 - -0.3 260,940 - +1.8 260,940 - -1.3 260,989 + -1.8 260,990 - +0.0 261,131 + +0.3 261,131 + +0.0 261,132 - -0.9 261,210 + -0.2 261,210 + -0.3 261,210 + -0.1 261,210 + -0.3 261,210 + -0.8 261,210 + +0.4 261,210 + -0.9 261,211 - +0.6 261,211 - +0.4 261,211 - +0.3 261,211 - +0.7 261,211 - -0.7 261,211 - +0.7 261,213 - -1.0 261,213 - +0.1 261,286 + ABZR87_RS01260 0.15 +0.5 261,453 + ABZR87_RS01260 0.29 +2.4 261,454 - ABZR87_RS01260 0.29 +0.1 261,513 + ABZR87_RS01260 0.34 -0.2 261,514 - ABZR87_RS01260 0.34 +1.4 261,514 - ABZR87_RS01260 0.34 -0.7 261,514 - ABZR87_RS01260 0.34 +0.4 261,515 + ABZR87_RS01260 0.34 +0.3 261,515 + ABZR87_RS01260 0.34 -0.0 261,515 + ABZR87_RS01260 0.34 -0.8 261,515 + ABZR87_RS01260 0.34 +0.8 261,516 - ABZR87_RS01260 0.34 -0.1 261,516 - ABZR87_RS01260 0.34 -2.2 261,516 - ABZR87_RS01260 0.34 -0.4 261,516 - ABZR87_RS01260 0.34 -0.7 261,516 - ABZR87_RS01260 0.34 +0.8 261,518 - ABZR87_RS01260 0.35 +0.1 261,645 + ABZR87_RS01260 0.46 -0.2 261,645 + ABZR87_RS01260 0.46 +0.8 261,645 + ABZR87_RS01260 0.46 -0.9 261,645 + ABZR87_RS01260 0.46 +0.2 261,645 + ABZR87_RS01260 0.46 +0.4 261,645 + ABZR87_RS01260 0.46 +1.4 261,645 + ABZR87_RS01260 0.46 +0.8 261,646 - ABZR87_RS01260 0.46 -0.1 261,646 - ABZR87_RS01260 0.46 -1.3 261,646 - ABZR87_RS01260 0.46 -0.4 261,646 - ABZR87_RS01260 0.46 +0.0 261,646 - ABZR87_RS01260 0.46 -0.0 261,646 - ABZR87_RS01260 0.46 -0.5 261,646 - ABZR87_RS01260 0.46 -0.7 261,810 + ABZR87_RS01260 0.60 +0.3 261,810 + ABZR87_RS01260 0.60 -0.7 261,811 - ABZR87_RS01260 0.60 +0.1 261,811 - ABZR87_RS01260 0.60 +0.1 261,811 - ABZR87_RS01260 0.60 +0.3 261,811 - ABZR87_RS01260 0.60 -0.3 261,811 - ABZR87_RS01260 0.60 -0.5 261,813 + ABZR87_RS01260 0.60 +0.2 261,813 + ABZR87_RS01260 0.60 -0.3
Or see this region's nucleotide sequence