Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00825 and ABZR87_RS00830 are separated by 148 nucleotides ABZR87_RS00830 and ABZR87_RS00835 are separated by 148 nucleotides ABZR87_RS00835 and ABZR87_RS00840 are separated by 86 nucleotides
ABZR87_RS00825: ABZR87_RS00825 - UDP-N-acetylmuramate dehydrogenase, at 165,917 to 166,945
_RS00825
ABZR87_RS00830: ABZR87_RS00830 - pyrimidine/purine nucleoside phosphorylase, at 167,094 to 167,411
_RS00830
ABZR87_RS00835: ABZR87_RS00835 - argininosuccinate synthase, at 167,560 to 168,897
_RS00835
ABZR87_RS00840: ABZR87_RS00840 - ornithine carbamoyltransferase, at 168,984 to 169,910
_RS00840
Position (kb)
167
168
169 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 166.943 kb on + strand at 166.944 kb on - strand at 166.944 kb on - strand at 166.944 kb on - strand at 166.944 kb on - strand at 166.944 kb on - strand at 167.023 kb on + strand at 167.024 kb on - strand at 167.046 kb on + strand at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.146 kb on - strand, within ABZR87_RS00830 at 167.146 kb on - strand, within ABZR87_RS00830 at 167.177 kb on + strand, within ABZR87_RS00830 at 167.178 kb on - strand, within ABZR87_RS00830 at 167.286 kb on + strand, within ABZR87_RS00830 at 167.287 kb on - strand, within ABZR87_RS00830 at 167.287 kb on - strand, within ABZR87_RS00830 at 167.287 kb on - strand, within ABZR87_RS00830 at 167.386 kb on - strand at 167.386 kb on - strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.404 kb on - strand at 167.427 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.474 kb on - strand at 167.474 kb on - strand at 167.474 kb on - strand at 167.674 kb on + strand at 167.680 kb on + strand at 167.680 kb on + strand at 167.680 kb on + strand at 167.681 kb on - strand at 167.681 kb on - strand at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.717 kb on - strand, within ABZR87_RS00835 at 167.717 kb on - strand, within ABZR87_RS00835 at 167.747 kb on - strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.855 kb on - strand, within ABZR87_RS00835 at 167.855 kb on - strand, within ABZR87_RS00835 at 167.980 kb on + strand, within ABZR87_RS00835 at 167.986 kb on + strand, within ABZR87_RS00835 at 168.019 kb on + strand, within ABZR87_RS00835 at 168.019 kb on + strand, within ABZR87_RS00835 at 168.130 kb on + strand, within ABZR87_RS00835 at 168.131 kb on - strand, within ABZR87_RS00835 at 168.433 kb on + strand, within ABZR87_RS00835 at 168.433 kb on + strand, within ABZR87_RS00835 at 168.433 kb on + strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.470 kb on - strand, within ABZR87_RS00835 at 168.517 kb on + strand, within ABZR87_RS00835 at 168.517 kb on + strand, within ABZR87_RS00835 at 168.517 kb on + strand, within ABZR87_RS00835 at 168.553 kb on + strand, within ABZR87_RS00835 at 168.554 kb on - strand, within ABZR87_RS00835 at 168.703 kb on + strand, within ABZR87_RS00835 at 168.704 kb on - strand, within ABZR87_RS00835 at 168.827 kb on - strand at 168.827 kb on - strand at 168.827 kb on - strand at 168.895 kb on + strand at 168.895 kb on + strand at 168.896 kb on - strand at 168.896 kb on - strand at 168.955 kb on + strand at 168.956 kb on - strand at 168.956 kb on - strand at 168.989 kb on - strand at 169.342 kb on + strand, within ABZR87_RS00840 at 169.798 kb on + strand, within ABZR87_RS00840 at 169.843 kb on + strand at 169.843 kb on + strand at 169.844 kb on - strand at 169.844 kb on - strand at 169.844 kb on - strand at 169.850 kb on - strand at 169.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 166,943 + +0.2 166,944 - -0.9 166,944 - +0.8 166,944 - +0.1 166,944 - -0.1 166,944 - +0.4 167,023 + +0.6 167,024 - -0.6 167,046 + -0.1 167,145 + ABZR87_RS00830 0.16 -0.3 167,145 + ABZR87_RS00830 0.16 -0.8 167,145 + ABZR87_RS00830 0.16 -0.1 167,145 + ABZR87_RS00830 0.16 +1.1 167,145 + ABZR87_RS00830 0.16 -0.0 167,146 - ABZR87_RS00830 0.16 -0.4 167,146 - ABZR87_RS00830 0.16 +0.2 167,177 + ABZR87_RS00830 0.26 +0.5 167,178 - ABZR87_RS00830 0.26 -0.6 167,286 + ABZR87_RS00830 0.60 +0.7 167,287 - ABZR87_RS00830 0.61 -1.8 167,287 - ABZR87_RS00830 0.61 -1.9 167,287 - ABZR87_RS00830 0.61 -0.5 167,386 - -0.8 167,386 - +0.2 167,391 + +0.1 167,391 + +0.3 167,391 + +0.6 167,391 + +0.1 167,391 + -0.3 167,391 + +1.2 167,391 + +1.4 167,391 + +0.4 167,391 + +0.5 167,391 + -0.0 167,392 - -0.8 167,392 - -0.8 167,392 - -1.9 167,392 - -2.0 167,392 - -0.2 167,404 - -1.3 167,427 + -0.8 167,473 + +0.1 167,473 + -3.1 167,473 + +1.4 167,473 + -0.9 167,473 + -0.8 167,474 - -1.5 167,474 - -1.8 167,474 - -2.6 167,674 + +1.8 167,680 + -1.2 167,680 + -0.8 167,680 + -0.2 167,681 - -0.3 167,681 - -1.5 167,716 + ABZR87_RS00835 0.12 +1.2 167,716 + ABZR87_RS00835 0.12 +0.8 167,716 + ABZR87_RS00835 0.12 -1.2 167,716 + ABZR87_RS00835 0.12 -1.2 167,716 + ABZR87_RS00835 0.12 -2.0 167,717 - ABZR87_RS00835 0.12 -2.2 167,717 - ABZR87_RS00835 0.12 -0.2 167,747 - ABZR87_RS00835 0.14 +0.8 167,850 + ABZR87_RS00835 0.22 -0.7 167,850 + ABZR87_RS00835 0.22 -1.3 167,850 + ABZR87_RS00835 0.22 -2.7 167,850 + ABZR87_RS00835 0.22 +0.8 167,850 + ABZR87_RS00835 0.22 -2.0 167,851 - ABZR87_RS00835 0.22 -2.2 167,851 - ABZR87_RS00835 0.22 +0.2 167,851 - ABZR87_RS00835 0.22 +0.0 167,851 - ABZR87_RS00835 0.22 -1.2 167,851 - ABZR87_RS00835 0.22 -0.6 167,855 - ABZR87_RS00835 0.22 -2.9 167,855 - ABZR87_RS00835 0.22 -0.5 167,980 + ABZR87_RS00835 0.31 -0.5 167,986 + ABZR87_RS00835 0.32 -2.6 168,019 + ABZR87_RS00835 0.34 +0.2 168,019 + ABZR87_RS00835 0.34 -0.0 168,130 + ABZR87_RS00835 0.43 -1.9 168,131 - ABZR87_RS00835 0.43 -0.2 168,433 + ABZR87_RS00835 0.65 -0.3 168,433 + ABZR87_RS00835 0.65 -0.2 168,433 + ABZR87_RS00835 0.65 -1.2 168,434 - ABZR87_RS00835 0.65 -0.8 168,434 - ABZR87_RS00835 0.65 -1.1 168,434 - ABZR87_RS00835 0.65 -1.2 168,434 - ABZR87_RS00835 0.65 +0.0 168,434 - ABZR87_RS00835 0.65 +0.6 168,470 - ABZR87_RS00835 0.68 -2.1 168,517 + ABZR87_RS00835 0.72 +0.0 168,517 + ABZR87_RS00835 0.72 -1.9 168,517 + ABZR87_RS00835 0.72 -0.2 168,553 + ABZR87_RS00835 0.74 -1.3 168,554 - ABZR87_RS00835 0.74 -1.3 168,703 + ABZR87_RS00835 0.85 -1.5 168,704 - ABZR87_RS00835 0.86 -0.5 168,827 - -1.3 168,827 - -0.5 168,827 - -0.2 168,895 + -0.1 168,895 + -0.2 168,896 - -1.0 168,896 - -1.8 168,955 + -0.3 168,956 - -0.9 168,956 - +1.5 168,989 - +0.3 169,342 + ABZR87_RS00840 0.39 -0.5 169,798 + ABZR87_RS00840 0.88 +0.8 169,843 + -0.8 169,843 + +1.8 169,844 - +0.8 169,844 - +0.8 169,844 - -0.5 169,850 - -1.0 169,882 + -0.8
Or see this region's nucleotide sequence