Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00775 and ABZR87_RS00780 are separated by 261 nucleotides ABZR87_RS00780 and ABZR87_RS00785 are separated by 140 nucleotides
ABZR87_RS00775: ABZR87_RS00775 - tRNA epoxyqueuosine(34) reductase QueG, at 155,860 to 157,011
_RS00775
ABZR87_RS00780: ABZR87_RS00780 - chalcone isomerase family protein, at 157,273 to 157,923
_RS00780
ABZR87_RS00785: ABZR87_RS00785 - tripartite tricarboxylate transporter substrate binding protein BugE, at 158,064 to 159,023
_RS00785
Position (kb) 157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.281 kb on + strand, within ABZR87_RS00775 at 156.282 kb on - strand, within ABZR87_RS00775 at 156.282 kb on - strand, within ABZR87_RS00775 at 156.337 kb on + strand, within ABZR87_RS00775 at 156.350 kb on + strand, within ABZR87_RS00775 at 156.351 kb on - strand, within ABZR87_RS00775 at 156.390 kb on + strand, within ABZR87_RS00775 at 156.577 kb on + strand, within ABZR87_RS00775 at 156.578 kb on - strand, within ABZR87_RS00775 at 156.578 kb on - strand, within ABZR87_RS00775 at 156.607 kb on + strand, within ABZR87_RS00775 at 156.607 kb on + strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.673 kb on + strand, within ABZR87_RS00775 at 156.674 kb on - strand, within ABZR87_RS00775 at 156.674 kb on - strand, within ABZR87_RS00775 at 157.067 kb on + strand at 157.067 kb on + strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.101 kb on + strand at 157.123 kb on + strand at 157.147 kb on + strand at 157.147 kb on + strand at 157.148 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.172 kb on + strand at 157.172 kb on + strand at 157.173 kb on - strand at 157.180 kb on - strand at 157.182 kb on + strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.251 kb on + strand at 157.251 kb on + strand at 157.257 kb on + strand at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.771 kb on + strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.988 kb on + strand at 157.988 kb on + strand at 157.988 kb on + strand at 157.989 kb on - strand at 157.989 kb on - strand at 158.031 kb on + strand at 158.031 kb on + strand at 158.031 kb on + strand at 158.031 kb on + strand at 158.032 kb on + strand at 158.032 kb on - strand at 158.032 kb on - strand at 158.032 kb on - strand at 158.032 kb on - strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.129 kb on + strand at 158.307 kb on + strand, within ABZR87_RS00785 at 158.307 kb on + strand, within ABZR87_RS00785 at 158.373 kb on + strand, within ABZR87_RS00785 at 158.374 kb on - strand, within ABZR87_RS00785 at 158.463 kb on + strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.506 kb on - strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 156,281 + ABZR87_RS00775 0.37 +0.2 156,282 - ABZR87_RS00775 0.37 +0.3 156,282 - ABZR87_RS00775 0.37 -1.1 156,337 + ABZR87_RS00775 0.41 -0.6 156,350 + ABZR87_RS00775 0.43 +0.8 156,351 - ABZR87_RS00775 0.43 +0.1 156,390 + ABZR87_RS00775 0.46 -1.2 156,577 + ABZR87_RS00775 0.62 +0.0 156,578 - ABZR87_RS00775 0.62 +0.8 156,578 - ABZR87_RS00775 0.62 +0.2 156,607 + ABZR87_RS00775 0.65 -1.3 156,607 + ABZR87_RS00775 0.65 +2.0 156,608 - ABZR87_RS00775 0.65 +0.7 156,608 - ABZR87_RS00775 0.65 -0.4 156,608 - ABZR87_RS00775 0.65 -0.5 156,608 - ABZR87_RS00775 0.65 +0.8 156,673 + ABZR87_RS00775 0.71 +1.8 156,674 - ABZR87_RS00775 0.71 +0.1 156,674 - ABZR87_RS00775 0.71 +0.1 157,067 + -2.2 157,067 + -0.5 157,068 - +0.7 157,068 - +0.3 157,068 - -2.4 157,101 + +0.7 157,123 + -0.8 157,147 + -0.1 157,147 + -1.5 157,148 - +0.3 157,170 + -0.6 157,171 - +0.1 157,171 - +0.5 157,172 + -0.6 157,172 + -0.0 157,173 - -0.5 157,180 - +2.0 157,182 + -1.6 157,214 - -1.3 157,214 - +1.3 157,214 - +0.2 157,214 - +1.8 157,214 - +0.6 157,251 + -1.7 157,251 + -0.5 157,257 + -1.4 157,516 + ABZR87_RS00780 0.37 +0.1 157,516 + ABZR87_RS00780 0.37 +0.5 157,516 + ABZR87_RS00780 0.37 +0.2 157,516 + ABZR87_RS00780 0.37 -1.0 157,516 + ABZR87_RS00780 0.37 +0.1 157,517 - ABZR87_RS00780 0.37 +0.4 157,517 - ABZR87_RS00780 0.37 +1.0 157,517 - ABZR87_RS00780 0.37 +0.1 157,517 - ABZR87_RS00780 0.37 +0.4 157,517 - ABZR87_RS00780 0.37 -0.2 157,532 - ABZR87_RS00780 0.40 +0.2 157,532 - ABZR87_RS00780 0.40 +0.9 157,532 - ABZR87_RS00780 0.40 +0.5 157,771 + ABZR87_RS00780 0.76 +0.0 157,847 - ABZR87_RS00780 0.88 +0.8 157,847 - ABZR87_RS00780 0.88 +0.3 157,988 + +0.1 157,988 + +0.4 157,988 + +0.5 157,989 - +0.6 157,989 - +0.6 158,031 + +0.1 158,031 + +0.1 158,031 + -0.2 158,031 + -0.3 158,032 + -1.1 158,032 - -0.2 158,032 - -0.4 158,032 - +0.4 158,032 - -1.0 158,124 + -0.7 158,124 + +0.8 158,124 + +0.8 158,124 + -0.4 158,124 + -0.2 158,124 + -2.2 158,124 + -0.9 158,124 + +0.1 158,125 - +0.0 158,125 - +0.6 158,125 - +0.5 158,125 - +0.6 158,125 - -0.3 158,129 + +1.4 158,307 + ABZR87_RS00785 0.25 +0.5 158,307 + ABZR87_RS00785 0.25 -0.3 158,373 + ABZR87_RS00785 0.32 -0.6 158,374 - ABZR87_RS00785 0.32 -0.8 158,463 + ABZR87_RS00785 0.42 +1.0 158,464 - ABZR87_RS00785 0.42 +0.5 158,464 - ABZR87_RS00785 0.42 +0.3 158,464 - ABZR87_RS00785 0.42 +0.7 158,505 + ABZR87_RS00785 0.46 -0.6 158,505 + ABZR87_RS00785 0.46 +0.1 158,506 - ABZR87_RS00785 0.46 +0.8 158,802 + ABZR87_RS00785 0.77 +0.3 158,802 + ABZR87_RS00785 0.77 +0.5 158,803 - ABZR87_RS00785 0.77 +1.1 158,803 - ABZR87_RS00785 0.77 +0.1
Or see this region's nucleotide sequence