Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00680 and ABZR87_RS00685 are separated by 109 nucleotides ABZR87_RS00685 and ABZR87_RS00690 are separated by 254 nucleotides ABZR87_RS00690 and ABZR87_RS00695 are separated by 146 nucleotides
ABZR87_RS00680: ABZR87_RS00680 - IclR family transcriptional regulator, at 138,724 to 139,494
_RS00680
ABZR87_RS00685: ABZR87_RS00685 - hypothetical protein, at 139,604 to 140,116
_RS00685
ABZR87_RS00690: ABZR87_RS00690 - ester cyclase, at 140,371 to 140,916
_RS00690
ABZR87_RS00695: ABZR87_RS00695 - DUF2167 domain-containing protein, at 141,063 to 141,992
_RS00695
Position (kb) 140
141 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 139.579 kb on + strand at 139.580 kb on - strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.606 kb on - strand at 139.606 kb on - strand at 139.710 kb on + strand, within ABZR87_RS00685 at 139.710 kb on + strand, within ABZR87_RS00685 at 139.710 kb on + strand, within ABZR87_RS00685 at 139.770 kb on + strand, within ABZR87_RS00685 at 140.101 kb on + strand at 140.102 kb on - strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.136 kb on - strand at 140.136 kb on - strand at 140.136 kb on - strand at 140.163 kb on + strand at 140.220 kb on + strand at 140.221 kb on - strand at 140.221 kb on - strand at 140.333 kb on + strand at 140.333 kb on + strand at 140.334 kb on - strand at 140.334 kb on - strand at 140.334 kb on - strand at 140.334 kb on - strand at 140.542 kb on + strand, within ABZR87_RS00690 at 140.560 kb on - strand, within ABZR87_RS00690 at 140.576 kb on - strand, within ABZR87_RS00690 at 140.831 kb on - strand, within ABZR87_RS00690 at 140.915 kb on - strand at 140.933 kb on - strand at 140.968 kb on - strand at 140.968 kb on - strand at 140.968 kb on - strand at 140.968 kb on - strand at 141.417 kb on + strand, within ABZR87_RS00695 at 141.417 kb on + strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.432 kb on + strand, within ABZR87_RS00695 at 141.432 kb on + strand, within ABZR87_RS00695 at 141.433 kb on - strand, within ABZR87_RS00695 at 141.433 kb on - strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.478 kb on - strand, within ABZR87_RS00695 at 141.577 kb on - strand, within ABZR87_RS00695 at 141.577 kb on - strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.691 kb on - strand, within ABZR87_RS00695 at 141.691 kb on - strand, within ABZR87_RS00695 at 141.792 kb on + strand, within ABZR87_RS00695 at 141.793 kb on - strand, within ABZR87_RS00695 at 141.831 kb on + strand, within ABZR87_RS00695
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 139,579 + +0.4 139,580 - +1.5 139,599 + -0.7 139,599 + -0.3 139,600 - -0.7 139,600 - +0.1 139,600 - -0.1 139,606 - -0.0 139,606 - +0.5 139,710 + ABZR87_RS00685 0.21 +0.7 139,710 + ABZR87_RS00685 0.21 -0.6 139,710 + ABZR87_RS00685 0.21 +1.0 139,770 + ABZR87_RS00685 0.32 -1.0 140,101 + -0.9 140,102 - +0.5 140,135 + +0.8 140,135 + -1.1 140,135 + +1.0 140,135 + -0.2 140,135 + +0.8 140,136 - -0.1 140,136 - -0.1 140,136 - -0.2 140,163 + +0.1 140,220 + +0.1 140,221 - +0.1 140,221 - +0.9 140,333 + -0.3 140,333 + -0.3 140,334 - -0.7 140,334 - -0.4 140,334 - +0.4 140,334 - +0.2 140,542 + ABZR87_RS00690 0.31 -1.3 140,560 - ABZR87_RS00690 0.35 -0.4 140,576 - ABZR87_RS00690 0.38 -1.2 140,831 - ABZR87_RS00690 0.84 -0.2 140,915 - +0.7 140,933 - +0.9 140,968 - +0.1 140,968 - +0.7 140,968 - +0.2 140,968 - -1.4 141,417 + ABZR87_RS00695 0.38 +0.3 141,417 + ABZR87_RS00695 0.38 +0.5 141,418 - ABZR87_RS00695 0.38 -0.6 141,418 - ABZR87_RS00695 0.38 +0.2 141,418 - ABZR87_RS00695 0.38 +0.0 141,432 + ABZR87_RS00695 0.40 -0.7 141,432 + ABZR87_RS00695 0.40 +0.0 141,433 - ABZR87_RS00695 0.40 -0.2 141,433 - ABZR87_RS00695 0.40 +0.8 141,477 + ABZR87_RS00695 0.45 +1.1 141,477 + ABZR87_RS00695 0.45 +0.3 141,477 + ABZR87_RS00695 0.45 +0.8 141,478 - ABZR87_RS00695 0.45 -0.2 141,577 - ABZR87_RS00695 0.55 +0.0 141,577 - ABZR87_RS00695 0.55 -0.4 141,660 + ABZR87_RS00695 0.64 -0.0 141,660 + ABZR87_RS00695 0.64 +0.0 141,660 + ABZR87_RS00695 0.64 +0.2 141,661 - ABZR87_RS00695 0.64 -0.2 141,661 - ABZR87_RS00695 0.64 -0.2 141,661 - ABZR87_RS00695 0.64 +3.4 141,669 + ABZR87_RS00695 0.65 -0.1 141,669 + ABZR87_RS00695 0.65 +0.4 141,669 + ABZR87_RS00695 0.65 -0.6 141,669 + ABZR87_RS00695 0.65 -0.4 141,669 + ABZR87_RS00695 0.65 -2.8 141,669 + ABZR87_RS00695 0.65 -1.0 141,669 + ABZR87_RS00695 0.65 +1.3 141,669 + ABZR87_RS00695 0.65 -0.7 141,669 + ABZR87_RS00695 0.65 +0.3 141,669 + ABZR87_RS00695 0.65 +0.9 141,669 + ABZR87_RS00695 0.65 +0.7 141,669 + ABZR87_RS00695 0.65 +0.7 141,669 + ABZR87_RS00695 0.65 -0.6 141,669 + ABZR87_RS00695 0.65 +1.2 141,669 + ABZR87_RS00695 0.65 +0.0 141,670 - ABZR87_RS00695 0.65 +0.8 141,670 - ABZR87_RS00695 0.65 +0.8 141,670 - ABZR87_RS00695 0.65 -0.7 141,670 - ABZR87_RS00695 0.65 +0.3 141,670 - ABZR87_RS00695 0.65 +0.2 141,670 - ABZR87_RS00695 0.65 -1.7 141,670 - ABZR87_RS00695 0.65 +0.2 141,670 - ABZR87_RS00695 0.65 -0.4 141,670 - ABZR87_RS00695 0.65 -0.1 141,670 - ABZR87_RS00695 0.65 +0.4 141,670 - ABZR87_RS00695 0.65 +0.0 141,670 - ABZR87_RS00695 0.65 -0.2 141,670 - ABZR87_RS00695 0.65 -0.4 141,670 - ABZR87_RS00695 0.65 +0.0 141,670 - ABZR87_RS00695 0.65 +0.7 141,670 - ABZR87_RS00695 0.65 -0.9 141,670 - ABZR87_RS00695 0.65 +0.4 141,670 - ABZR87_RS00695 0.65 +0.1 141,670 - ABZR87_RS00695 0.65 +1.1 141,670 - ABZR87_RS00695 0.65 +0.3 141,690 + ABZR87_RS00695 0.67 -1.0 141,690 + ABZR87_RS00695 0.67 +0.8 141,690 + ABZR87_RS00695 0.67 +0.3 141,690 + ABZR87_RS00695 0.67 +0.0 141,691 - ABZR87_RS00695 0.68 -0.2 141,691 - ABZR87_RS00695 0.68 -0.3 141,792 + ABZR87_RS00695 0.78 -0.3 141,793 - ABZR87_RS00695 0.78 +0.4 141,831 + ABZR87_RS00695 0.83 -0.6
Or see this region's nucleotide sequence