Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00380 and ABZR87_RS00385 are separated by 402 nucleotides ABZR87_RS00385 and ABZR87_RS00390 are separated by 66 nucleotides
ABZR87_RS00380: ABZR87_RS00380 - phosphoribosylglycinamide formyltransferase, at 77,484 to 78,134
_RS00380
ABZR87_RS00385: ABZR87_RS00385 - response regulator transcription factor, at 78,537 to 79,202
_RS00385
ABZR87_RS00390: ABZR87_RS00390 - hybrid sensor histidine kinase/response regulator, at 79,269 to 81,101
_RS00390
Position (kb) 78
79
80 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 77.619 kb on + strand, within ABZR87_RS00380 at 78.145 kb on + strand at 78.146 kb on - strand at 78.325 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.425 kb on - strand at 78.453 kb on + strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.497 kb on + strand at 78.497 kb on + strand at 78.497 kb on + strand at 78.498 kb on - strand at 78.498 kb on - strand at 78.498 kb on - strand at 78.532 kb on + strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.554 kb on + strand at 78.555 kb on - strand at 78.941 kb on + strand, within ABZR87_RS00385 at 78.942 kb on - strand, within ABZR87_RS00385 at 79.267 kb on + strand at 79.267 kb on + strand at 79.273 kb on + strand at 79.274 kb on - strand at 79.366 kb on + strand at 79.366 kb on + strand at 79.367 kb on - strand at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.465 kb on - strand, within ABZR87_RS00390 at 79.465 kb on - strand, within ABZR87_RS00390 at 79.674 kb on + strand, within ABZR87_RS00390 at 79.674 kb on + strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.829 kb on - strand, within ABZR87_RS00390 at 79.829 kb on - strand, within ABZR87_RS00390 at 79.829 kb on - strand, within ABZR87_RS00390 at 79.888 kb on + strand, within ABZR87_RS00390 at 79.888 kb on + strand, within ABZR87_RS00390 at 79.889 kb on - strand, within ABZR87_RS00390 at 79.889 kb on - strand, within ABZR87_RS00390 at 79.889 kb on - strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.892 kb on - strand, within ABZR87_RS00390 at 79.892 kb on - strand, within ABZR87_RS00390 at 79.892 kb on - strand, within ABZR87_RS00390 at 80.080 kb on - strand, within ABZR87_RS00390
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 77,619 + ABZR87_RS00380 0.21 +0.8 78,145 + -1.5 78,146 - -1.5 78,325 + -0.5 78,326 + +0.8 78,326 + +1.1 78,326 + +0.8 78,326 + +1.8 78,326 + +0.4 78,326 + -0.5 78,326 + +0.9 78,326 + +1.0 78,326 + +0.6 78,326 + +0.0 78,326 + +1.5 78,326 + +1.2 78,326 + +1.3 78,327 - -2.9 78,327 - -0.2 78,327 - -4.4 78,327 - -2.3 78,327 - -3.0 78,327 - -2.3 78,327 - -4.6 78,425 - -3.2 78,453 + +1.8 78,454 - -3.7 78,454 - -4.4 78,454 - -2.5 78,497 + +0.8 78,497 + +0.4 78,497 + +0.9 78,498 - -4.7 78,498 - -2.2 78,498 - +0.8 78,532 + -0.5 78,533 - -4.3 78,533 - -3.5 78,533 - -5.0 78,533 - -1.3 78,554 + -4.2 78,555 - -1.8 78,941 + ABZR87_RS00385 0.61 -1.0 78,942 - ABZR87_RS00385 0.61 -4.1 79,267 + -0.8 79,267 + +0.2 79,273 + +0.3 79,274 - -0.3 79,366 + -0.6 79,366 + -3.8 79,367 - -4.0 79,464 + ABZR87_RS00390 0.11 -2.0 79,464 + ABZR87_RS00390 0.11 -4.3 79,464 + ABZR87_RS00390 0.11 -1.4 79,464 + ABZR87_RS00390 0.11 -3.8 79,464 + ABZR87_RS00390 0.11 -4.4 79,464 + ABZR87_RS00390 0.11 -0.7 79,464 + ABZR87_RS00390 0.11 -2.6 79,464 + ABZR87_RS00390 0.11 -3.4 79,465 - ABZR87_RS00390 0.11 -3.0 79,465 - ABZR87_RS00390 0.11 -4.4 79,674 + ABZR87_RS00390 0.22 -2.9 79,674 + ABZR87_RS00390 0.22 -3.0 79,675 - ABZR87_RS00390 0.22 -1.3 79,675 - ABZR87_RS00390 0.22 -3.4 79,675 - ABZR87_RS00390 0.22 -4.2 79,675 - ABZR87_RS00390 0.22 -0.9 79,675 - ABZR87_RS00390 0.22 -2.6 79,675 - ABZR87_RS00390 0.22 -0.9 79,829 - ABZR87_RS00390 0.31 -2.8 79,829 - ABZR87_RS00390 0.31 -2.4 79,829 - ABZR87_RS00390 0.31 -2.6 79,888 + ABZR87_RS00390 0.34 -4.3 79,888 + ABZR87_RS00390 0.34 -2.3 79,889 - ABZR87_RS00390 0.34 -3.7 79,889 - ABZR87_RS00390 0.34 -3.9 79,889 - ABZR87_RS00390 0.34 -4.7 79,891 + ABZR87_RS00390 0.34 -2.2 79,891 + ABZR87_RS00390 0.34 -5.5 79,891 + ABZR87_RS00390 0.34 -1.0 79,891 + ABZR87_RS00390 0.34 -1.7 79,891 + ABZR87_RS00390 0.34 -3.0 79,891 + ABZR87_RS00390 0.34 -3.5 79,892 - ABZR87_RS00390 0.34 -3.6 79,892 - ABZR87_RS00390 0.34 +1.8 79,892 - ABZR87_RS00390 0.34 -4.5 80,080 - ABZR87_RS00390 0.44 -2.1
Or see this region's nucleotide sequence