Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00355 and ABZR87_RS00360 are separated by 187 nucleotides ABZR87_RS00360 and ABZR87_RS00365 are separated by 370 nucleotides
ABZR87_RS00355: ABZR87_RS00355 - quinolinate synthase NadA, at 71,228 to 72,376
_RS00355
ABZR87_RS00360: ABZR87_RS00360 - acyl-CoA desaturase, at 72,564 to 73,754
_RS00360
ABZR87_RS00365: ABZR87_RS00365 - mechanosensitive ion channel domain-containing protein, at 74,125 to 75,501
_RS00365
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 71.778 kb on + strand, within ABZR87_RS00355 at 71.778 kb on + strand, within ABZR87_RS00355 at 71.779 kb on - strand, within ABZR87_RS00355 at 71.779 kb on - strand, within ABZR87_RS00355 at 71.779 kb on - strand, within ABZR87_RS00355 at 71.906 kb on - strand, within ABZR87_RS00355 at 71.913 kb on + strand, within ABZR87_RS00355 at 71.913 kb on + strand, within ABZR87_RS00355 at 71.913 kb on + strand, within ABZR87_RS00355 at 71.914 kb on - strand, within ABZR87_RS00355 at 71.914 kb on - strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.186 kb on + strand, within ABZR87_RS00355 at 72.186 kb on + strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.468 kb on + strand at 72.468 kb on + strand at 72.486 kb on + strand at 72.486 kb on + strand at 72.549 kb on + strand at 72.549 kb on + strand at 72.549 kb on + strand at 72.550 kb on - strand at 72.880 kb on + strand, within ABZR87_RS00360 at 73.043 kb on - strand, within ABZR87_RS00360 at 73.100 kb on - strand, within ABZR87_RS00360 at 73.426 kb on + strand, within ABZR87_RS00360 at 73.427 kb on - strand, within ABZR87_RS00360 at 73.807 kb on - strand at 73.829 kb on - strand at 73.829 kb on - strand at 73.829 kb on - strand at 73.853 kb on - strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.938 kb on - strand at 73.938 kb on - strand at 73.938 kb on - strand at 73.938 kb on - strand at 73.938 kb on - strand at 73.959 kb on + strand at 73.959 kb on + strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.989 kb on + strand at 73.990 kb on - strand at 73.990 kb on - strand at 74.014 kb on + strand at 74.015 kb on - strand at 74.015 kb on - strand at 74.050 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.126 kb on + strand at 74.126 kb on + strand at 74.127 kb on - strand at 74.127 kb on - strand at 74.127 kb on - strand at 74.127 kb on - strand at 74.127 kb on - strand at 74.231 kb on + strand at 74.267 kb on + strand, within ABZR87_RS00365 at 74.268 kb on - strand, within ABZR87_RS00365 at 74.342 kb on + strand, within ABZR87_RS00365 at 74.343 kb on - strand, within ABZR87_RS00365 at 74.465 kb on + strand, within ABZR87_RS00365 at 74.466 kb on - strand, within ABZR87_RS00365 at 74.559 kb on + strand, within ABZR87_RS00365 at 74.560 kb on - strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 71,778 + ABZR87_RS00355 0.48 -0.4 71,778 + ABZR87_RS00355 0.48 +0.1 71,779 - ABZR87_RS00355 0.48 +0.2 71,779 - ABZR87_RS00355 0.48 -2.0 71,779 - ABZR87_RS00355 0.48 -0.4 71,906 - ABZR87_RS00355 0.59 +0.5 71,913 + ABZR87_RS00355 0.60 -0.8 71,913 + ABZR87_RS00355 0.60 +0.1 71,913 + ABZR87_RS00355 0.60 -0.6 71,914 - ABZR87_RS00355 0.60 -0.7 71,914 - ABZR87_RS00355 0.60 -0.4 72,183 + ABZR87_RS00355 0.83 +0.1 72,183 + ABZR87_RS00355 0.83 +0.8 72,183 + ABZR87_RS00355 0.83 -1.4 72,183 + ABZR87_RS00355 0.83 +1.8 72,183 + ABZR87_RS00355 0.83 +0.5 72,183 + ABZR87_RS00355 0.83 -1.5 72,184 - ABZR87_RS00355 0.83 +0.7 72,184 - ABZR87_RS00355 0.83 -0.5 72,184 - ABZR87_RS00355 0.83 -1.1 72,184 - ABZR87_RS00355 0.83 -0.3 72,184 - ABZR87_RS00355 0.83 +0.6 72,184 - ABZR87_RS00355 0.83 +0.8 72,184 - ABZR87_RS00355 0.83 -1.0 72,184 - ABZR87_RS00355 0.83 -0.1 72,184 - ABZR87_RS00355 0.83 -0.3 72,184 - ABZR87_RS00355 0.83 +0.1 72,184 - ABZR87_RS00355 0.83 -0.2 72,186 + ABZR87_RS00355 0.83 -0.6 72,186 + ABZR87_RS00355 0.83 +0.8 72,187 - ABZR87_RS00355 0.83 -0.4 72,187 - ABZR87_RS00355 0.83 -0.4 72,187 - ABZR87_RS00355 0.83 -1.2 72,187 - ABZR87_RS00355 0.83 -0.9 72,468 + -0.4 72,468 + +0.1 72,486 + -0.3 72,486 + +0.3 72,549 + -0.4 72,549 + +0.6 72,549 + -0.9 72,550 - -0.8 72,880 + ABZR87_RS00360 0.27 +0.8 73,043 - ABZR87_RS00360 0.40 +0.8 73,100 - ABZR87_RS00360 0.45 +1.8 73,426 + ABZR87_RS00360 0.72 -1.5 73,427 - ABZR87_RS00360 0.72 +1.8 73,807 - +0.1 73,829 - +0.7 73,829 - -0.3 73,829 - +0.2 73,853 - -0.7 73,935 + +1.8 73,935 + +1.8 73,935 + +1.8 73,935 + +1.8 73,935 + +0.8 73,935 + +1.8 73,935 + +0.8 73,935 + -0.2 73,935 + -0.2 73,935 + +0.3 73,935 + -1.2 73,936 - +1.0 73,936 - -1.3 73,936 - +0.1 73,936 - -2.3 73,936 - -0.2 73,936 - -1.6 73,936 - -0.1 73,936 - -1.6 73,936 - -0.2 73,936 - -0.0 73,936 - +0.3 73,936 - -0.5 73,936 - -1.0 73,936 - -0.7 73,936 - -1.3 73,937 + +0.3 73,937 + -0.2 73,937 + +1.8 73,937 + +0.8 73,937 + +1.8 73,937 + +0.8 73,937 + -0.2 73,937 + +1.8 73,938 - -0.2 73,938 - +0.5 73,938 - +1.3 73,938 - +0.1 73,938 - -0.5 73,959 + +1.8 73,959 + -0.7 73,960 - -0.4 73,960 - -1.2 73,960 - -0.3 73,960 - -0.4 73,960 - +1.1 73,960 - -0.1 73,960 - -1.9 73,960 - +0.0 73,960 - +0.5 73,960 - -1.6 73,989 + +2.8 73,990 - -0.4 73,990 - -1.1 74,014 + -1.0 74,015 - -1.3 74,015 - +0.1 74,050 + -1.6 74,059 + -0.1 74,059 + +0.1 74,059 + +4.2 74,059 + +2.4 74,059 + -0.2 74,059 + +1.3 74,060 - +0.4 74,060 - +0.2 74,060 - -0.4 74,126 + +0.4 74,126 + +0.7 74,127 - -0.2 74,127 - -0.5 74,127 - +0.5 74,127 - +1.8 74,127 - -0.5 74,231 + -0.6 74,267 + ABZR87_RS00365 0.10 -0.0 74,268 - ABZR87_RS00365 0.10 -0.1 74,342 + ABZR87_RS00365 0.16 -0.1 74,343 - ABZR87_RS00365 0.16 -0.5 74,465 + ABZR87_RS00365 0.25 +0.0 74,466 - ABZR87_RS00365 0.25 -2.1 74,559 + ABZR87_RS00365 0.32 +0.9 74,560 - ABZR87_RS00365 0.32 -0.7 74,621 + ABZR87_RS00365 0.36 +1.7 74,621 + ABZR87_RS00365 0.36 +0.3 74,621 + ABZR87_RS00365 0.36 -0.4 74,621 + ABZR87_RS00365 0.36 -0.4 74,622 - ABZR87_RS00365 0.36 -0.3 74,622 - ABZR87_RS00365 0.36 -1.5 74,622 - ABZR87_RS00365 0.36 -0.5 74,622 - ABZR87_RS00365 0.36 -0.1 74,622 - ABZR87_RS00365 0.36 -1.3 74,690 + ABZR87_RS00365 0.41 -0.5 74,690 + ABZR87_RS00365 0.41 -0.5 74,690 + ABZR87_RS00365 0.41 -0.7 74,690 + ABZR87_RS00365 0.41 -0.3 74,691 - ABZR87_RS00365 0.41 -0.4 74,691 - ABZR87_RS00365 0.41 -1.2 74,691 - ABZR87_RS00365 0.41 -0.6 74,691 - ABZR87_RS00365 0.41 -0.4
Or see this region's nucleotide sequence