Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00320 and ABZR87_RS00325 are separated by 1 nucleotides ABZR87_RS00325 and ABZR87_RS00330 are separated by 118 nucleotides ABZR87_RS00330 and ABZR87_RS00335 are separated by 180 nucleotides
ABZR87_RS00320: ABZR87_RS00320 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 65,679 to 66,662
_RS00320
ABZR87_RS00325: ABZR87_RS00325 - peptidylprolyl isomerase, at 66,664 to 67,152
_RS00325
ABZR87_RS00330: ABZR87_RS00330 - DNA repair protein RadC, at 67,271 to 67,945
_RS00330
ABZR87_RS00335: ABZR87_RS00335 - 50S ribosomal protein L28, at 68,126 to 68,359
_RS00335
Position (kb)
66
67
68 Strain fitness (log2 ratio)
-2
-1
0
1 at 66.774 kb on - strand, within ABZR87_RS00325 at 66.774 kb on - strand, within ABZR87_RS00325 at 66.774 kb on - strand, within ABZR87_RS00325 at 66.774 kb on - strand, within ABZR87_RS00325 at 66.778 kb on - strand, within ABZR87_RS00325 at 66.949 kb on - strand, within ABZR87_RS00325 at 67.065 kb on - strand, within ABZR87_RS00325 at 67.185 kb on - strand at 67.185 kb on - strand at 67.189 kb on + strand at 67.189 kb on + strand at 67.189 kb on + strand at 67.189 kb on + strand at 67.190 kb on - strand at 67.190 kb on - strand at 67.190 kb on - strand at 67.190 kb on - strand at 67.223 kb on + strand at 67.223 kb on + strand at 67.223 kb on + strand at 67.224 kb on - strand at 67.270 kb on + strand at 67.270 kb on + strand at 67.270 kb on + strand at 67.271 kb on - strand at 67.271 kb on - strand at 67.505 kb on + strand, within ABZR87_RS00330 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.659 kb on + strand, within ABZR87_RS00330 at 67.659 kb on + strand, within ABZR87_RS00330 at 67.659 kb on + strand, within ABZR87_RS00330 at 67.660 kb on - strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.666 kb on - strand, within ABZR87_RS00330 at 67.666 kb on - strand, within ABZR87_RS00330 at 67.666 kb on - strand, within ABZR87_RS00330 at 67.916 kb on + strand at 67.916 kb on + strand at 67.917 kb on - strand at 67.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 66,774 - ABZR87_RS00325 0.22 -1.2 66,774 - ABZR87_RS00325 0.22 -2.2 66,774 - ABZR87_RS00325 0.22 -1.0 66,774 - ABZR87_RS00325 0.22 +1.1 66,778 - ABZR87_RS00325 0.23 +0.1 66,949 - ABZR87_RS00325 0.58 -2.1 67,065 - ABZR87_RS00325 0.82 -1.3 67,185 - -1.3 67,185 - +0.6 67,189 + +0.4 67,189 + -0.2 67,189 + -0.5 67,189 + -0.5 67,190 - -0.8 67,190 - -0.1 67,190 - -1.2 67,190 - -0.4 67,223 + +0.4 67,223 + -0.7 67,223 + +1.0 67,224 - +0.6 67,270 + +0.3 67,270 + -0.2 67,270 + -1.0 67,271 - -0.2 67,271 - +0.6 67,505 + ABZR87_RS00330 0.35 +0.2 67,505 + ABZR87_RS00330 0.35 +0.3 67,505 + ABZR87_RS00330 0.35 +0.8 67,505 + ABZR87_RS00330 0.35 +1.1 67,506 - ABZR87_RS00330 0.35 -1.5 67,506 - ABZR87_RS00330 0.35 +0.8 67,506 - ABZR87_RS00330 0.35 -0.2 67,506 - ABZR87_RS00330 0.35 +1.3 67,659 + ABZR87_RS00330 0.57 +0.5 67,659 + ABZR87_RS00330 0.57 -1.4 67,659 + ABZR87_RS00330 0.57 +0.4 67,660 - ABZR87_RS00330 0.58 +0.4 67,665 + ABZR87_RS00330 0.58 +0.1 67,665 + ABZR87_RS00330 0.58 +0.3 67,665 + ABZR87_RS00330 0.58 -0.1 67,665 + ABZR87_RS00330 0.58 -0.5 67,665 + ABZR87_RS00330 0.58 -0.5 67,665 + ABZR87_RS00330 0.58 +0.6 67,665 + ABZR87_RS00330 0.58 -0.4 67,665 + ABZR87_RS00330 0.58 +1.0 67,665 + ABZR87_RS00330 0.58 -0.3 67,665 + ABZR87_RS00330 0.58 -0.9 67,666 - ABZR87_RS00330 0.59 +0.2 67,666 - ABZR87_RS00330 0.59 -0.5 67,666 - ABZR87_RS00330 0.59 -0.7 67,916 + -0.3 67,916 + -0.0 67,917 - -1.1 67,917 - -1.2
Or see this region's nucleotide sequence