Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00280 and ABZR87_RS00285 are separated by 271 nucleotides ABZR87_RS00285 and ABZR87_RS00290 are separated by 79 nucleotides ABZR87_RS00290 and ABZR87_RS00295 are separated by 66 nucleotides
ABZR87_RS00280: ABZR87_RS00280 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 57,075 to 58,124
_RS00280
ABZR87_RS00285: ABZR87_RS00285 - acetylornithine transaminase, at 58,396 to 59,583
_RS00285
ABZR87_RS00290: ABZR87_RS00290 - GNAT family N-acetyltransferase, at 59,663 to 60,139
_RS00290
ABZR87_RS00295: ABZR87_RS00295 - ABC transporter ATP-binding protein, at 60,206 to 60,922
_RS00295
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 57.462 kb on - strand, within ABZR87_RS00280 at 57.462 kb on - strand, within ABZR87_RS00280 at 57.462 kb on - strand, within ABZR87_RS00280 at 57.462 kb on - strand, within ABZR87_RS00280 at 57.483 kb on + strand, within ABZR87_RS00280 at 57.483 kb on + strand, within ABZR87_RS00280 at 57.484 kb on - strand, within ABZR87_RS00280 at 57.522 kb on + strand, within ABZR87_RS00280 at 57.522 kb on + strand, within ABZR87_RS00280 at 57.522 kb on + strand, within ABZR87_RS00280 at 57.523 kb on - strand, within ABZR87_RS00280 at 57.523 kb on - strand, within ABZR87_RS00280 at 57.596 kb on + strand, within ABZR87_RS00280 at 57.603 kb on + strand, within ABZR87_RS00280 at 57.603 kb on + strand, within ABZR87_RS00280 at 57.604 kb on - strand, within ABZR87_RS00280 at 57.804 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.834 kb on + strand, within ABZR87_RS00280 at 57.835 kb on - strand, within ABZR87_RS00280 at 57.835 kb on - strand, within ABZR87_RS00280 at 57.835 kb on - strand, within ABZR87_RS00280 at 57.835 kb on - strand, within ABZR87_RS00280 at 57.835 kb on - strand, within ABZR87_RS00280 at 57.835 kb on - strand, within ABZR87_RS00280 at 57.886 kb on - strand, within ABZR87_RS00280 at 57.886 kb on - strand, within ABZR87_RS00280 at 57.886 kb on - strand, within ABZR87_RS00280 at 57.970 kb on - strand, within ABZR87_RS00280 at 57.997 kb on - strand, within ABZR87_RS00280 at 58.184 kb on - strand at 58.184 kb on - strand at 58.184 kb on - strand at 58.196 kb on + strand at 58.197 kb on - strand at 58.197 kb on - strand at 58.274 kb on + strand at 58.412 kb on - strand at 58.432 kb on + strand at 58.432 kb on + strand at 58.432 kb on + strand at 58.432 kb on + strand at 58.432 kb on + strand at 58.432 kb on + strand at 58.433 kb on - strand at 58.433 kb on - strand at 58.433 kb on - strand at 58.433 kb on - strand at 58.433 kb on - strand at 58.756 kb on - strand, within ABZR87_RS00285 at 58.756 kb on - strand, within ABZR87_RS00285 at 58.756 kb on - strand, within ABZR87_RS00285 at 59.224 kb on + strand, within ABZR87_RS00285 at 59.224 kb on + strand, within ABZR87_RS00285 at 59.224 kb on + strand, within ABZR87_RS00285 at 59.320 kb on + strand, within ABZR87_RS00285 at 59.320 kb on + strand, within ABZR87_RS00285 at 59.596 kb on + strand at 59.596 kb on + strand at 59.596 kb on + strand at 59.597 kb on - strand at 59.597 kb on - strand at 59.597 kb on - strand at 59.597 kb on - strand at 59.597 kb on - strand at 59.597 kb on - strand at 59.736 kb on + strand, within ABZR87_RS00290 at 59.737 kb on + strand, within ABZR87_RS00290 at 59.737 kb on + strand, within ABZR87_RS00290 at 59.737 kb on + strand, within ABZR87_RS00290 at 59.737 kb on + strand, within ABZR87_RS00290 at 59.737 kb on + strand, within ABZR87_RS00290 at 59.737 kb on + strand, within ABZR87_RS00290 at 59.737 kb on + strand, within ABZR87_RS00290 at 59.738 kb on - strand, within ABZR87_RS00290 at 59.738 kb on - strand, within ABZR87_RS00290 at 59.738 kb on - strand, within ABZR87_RS00290 at 59.738 kb on - strand, within ABZR87_RS00290 at 59.738 kb on - strand, within ABZR87_RS00290 at 59.738 kb on - strand, within ABZR87_RS00290 at 59.741 kb on + strand, within ABZR87_RS00290 at 59.741 kb on + strand, within ABZR87_RS00290 at 59.741 kb on + strand, within ABZR87_RS00290 at 59.741 kb on + strand, within ABZR87_RS00290 at 59.742 kb on - strand, within ABZR87_RS00290 at 59.742 kb on - strand, within ABZR87_RS00290 at 59.742 kb on - strand, within ABZR87_RS00290 at 59.765 kb on + strand, within ABZR87_RS00290 at 59.765 kb on + strand, within ABZR87_RS00290 at 59.835 kb on - strand, within ABZR87_RS00290 at 59.913 kb on - strand, within ABZR87_RS00290 at 59.913 kb on - strand, within ABZR87_RS00290 at 60.017 kb on - strand, within ABZR87_RS00290 at 60.017 kb on - strand, within ABZR87_RS00290 at 60.050 kb on + strand, within ABZR87_RS00290 at 60.050 kb on + strand, within ABZR87_RS00290 at 60.051 kb on - strand, within ABZR87_RS00290 at 60.119 kb on + strand at 60.119 kb on + strand at 60.119 kb on + strand at 60.120 kb on - strand at 60.120 kb on - strand at 60.120 kb on - strand at 60.120 kb on - strand at 60.120 kb on - strand at 60.120 kb on - strand at 60.208 kb on - strand at 60.208 kb on - strand at 60.208 kb on - strand at 60.208 kb on - strand at 60.219 kb on + strand at 60.219 kb on + strand at 60.220 kb on - strand at 60.220 kb on - strand at 60.220 kb on - strand at 60.297 kb on + strand, within ABZR87_RS00295
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 57,462 - ABZR87_RS00280 0.37 +0.3 57,462 - ABZR87_RS00280 0.37 -0.2 57,462 - ABZR87_RS00280 0.37 -0.3 57,462 - ABZR87_RS00280 0.37 +0.8 57,483 + ABZR87_RS00280 0.39 +0.3 57,483 + ABZR87_RS00280 0.39 -0.5 57,484 - ABZR87_RS00280 0.39 +0.1 57,522 + ABZR87_RS00280 0.43 +0.3 57,522 + ABZR87_RS00280 0.43 +0.3 57,522 + ABZR87_RS00280 0.43 +0.1 57,523 - ABZR87_RS00280 0.43 -0.7 57,523 - ABZR87_RS00280 0.43 -0.3 57,596 + ABZR87_RS00280 0.50 +0.8 57,603 + ABZR87_RS00280 0.50 +0.3 57,603 + ABZR87_RS00280 0.50 +0.4 57,604 - ABZR87_RS00280 0.50 +0.8 57,804 + ABZR87_RS00280 0.69 +0.6 57,834 + ABZR87_RS00280 0.72 -0.6 57,834 + ABZR87_RS00280 0.72 +0.8 57,834 + ABZR87_RS00280 0.72 +0.4 57,834 + ABZR87_RS00280 0.72 -0.6 57,834 + ABZR87_RS00280 0.72 -0.7 57,834 + ABZR87_RS00280 0.72 -1.2 57,834 + ABZR87_RS00280 0.72 -0.7 57,834 + ABZR87_RS00280 0.72 -0.5 57,834 + ABZR87_RS00280 0.72 +0.2 57,834 + ABZR87_RS00280 0.72 -0.4 57,834 + ABZR87_RS00280 0.72 -0.5 57,835 - ABZR87_RS00280 0.72 -0.3 57,835 - ABZR87_RS00280 0.72 +1.8 57,835 - ABZR87_RS00280 0.72 -0.5 57,835 - ABZR87_RS00280 0.72 -0.2 57,835 - ABZR87_RS00280 0.72 +0.0 57,835 - ABZR87_RS00280 0.72 +0.4 57,886 - ABZR87_RS00280 0.77 +0.6 57,886 - ABZR87_RS00280 0.77 -0.2 57,886 - ABZR87_RS00280 0.77 +1.0 57,970 - ABZR87_RS00280 0.85 +1.6 57,997 - ABZR87_RS00280 0.88 -0.2 58,184 - -0.2 58,184 - -1.2 58,184 - -0.8 58,196 + +0.0 58,197 - -1.0 58,197 - -1.0 58,274 + +0.1 58,412 - -0.2 58,432 + -1.9 58,432 + -3.1 58,432 + -2.1 58,432 + -1.7 58,432 + -0.5 58,432 + -1.0 58,433 - -0.7 58,433 - -1.7 58,433 - -1.6 58,433 - -0.2 58,433 - -2.4 58,756 - ABZR87_RS00285 0.30 +0.3 58,756 - ABZR87_RS00285 0.30 +1.8 58,756 - ABZR87_RS00285 0.30 -1.6 59,224 + ABZR87_RS00285 0.70 -0.5 59,224 + ABZR87_RS00285 0.70 +0.3 59,224 + ABZR87_RS00285 0.70 -1.7 59,320 + ABZR87_RS00285 0.78 -1.0 59,320 + ABZR87_RS00285 0.78 -1.6 59,596 + -0.1 59,596 + +0.3 59,596 + -0.5 59,597 - -0.5 59,597 - +0.1 59,597 - +0.8 59,597 - -1.2 59,597 - +0.3 59,597 - +1.0 59,736 + ABZR87_RS00290 0.15 +0.1 59,737 + ABZR87_RS00290 0.16 -0.6 59,737 + ABZR87_RS00290 0.16 +0.6 59,737 + ABZR87_RS00290 0.16 -0.2 59,737 + ABZR87_RS00290 0.16 -0.5 59,737 + ABZR87_RS00290 0.16 -0.7 59,737 + ABZR87_RS00290 0.16 +1.8 59,737 + ABZR87_RS00290 0.16 +0.1 59,738 - ABZR87_RS00290 0.16 +2.0 59,738 - ABZR87_RS00290 0.16 -0.4 59,738 - ABZR87_RS00290 0.16 +0.3 59,738 - ABZR87_RS00290 0.16 +0.1 59,738 - ABZR87_RS00290 0.16 -0.8 59,738 - ABZR87_RS00290 0.16 -0.2 59,741 + ABZR87_RS00290 0.16 -1.2 59,741 + ABZR87_RS00290 0.16 -0.3 59,741 + ABZR87_RS00290 0.16 +0.5 59,741 + ABZR87_RS00290 0.16 -0.3 59,742 - ABZR87_RS00290 0.17 -0.6 59,742 - ABZR87_RS00290 0.17 -0.5 59,742 - ABZR87_RS00290 0.17 -0.1 59,765 + ABZR87_RS00290 0.21 -0.8 59,765 + ABZR87_RS00290 0.21 -0.3 59,835 - ABZR87_RS00290 0.36 -2.3 59,913 - ABZR87_RS00290 0.52 -0.1 59,913 - ABZR87_RS00290 0.52 +0.6 60,017 - ABZR87_RS00290 0.74 -1.0 60,017 - ABZR87_RS00290 0.74 -0.9 60,050 + ABZR87_RS00290 0.81 -0.2 60,050 + ABZR87_RS00290 0.81 -0.8 60,051 - ABZR87_RS00290 0.81 +1.8 60,119 + +0.9 60,119 + -1.5 60,119 + +1.4 60,120 - +0.7 60,120 - -0.2 60,120 - -0.2 60,120 - -0.7 60,120 - -0.9 60,120 - -0.7 60,208 - -0.3 60,208 - +0.3 60,208 - +0.4 60,208 - -0.3 60,219 + +0.0 60,219 + -0.2 60,220 - -0.4 60,220 - +1.0 60,220 - -0.5 60,297 + ABZR87_RS00295 0.13 -0.2
Or see this region's nucleotide sequence