Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00190 and ABZR87_RS00195 are separated by 2 nucleotides ABZR87_RS00195 and ABZR87_RS00200 are separated by 20 nucleotides ABZR87_RS00200 and ABZR87_RS00205 overlap by 4 nucleotides ABZR87_RS00205 and ABZR87_RS00210 are separated by 17 nucleotides
ABZR87_RS00190: ABZR87_RS00190 - sulfate adenylyltransferase subunit 1, at 37,104 to 38,411
_RS00190
ABZR87_RS00195: ABZR87_RS00195 - sulfate adenylyltransferase subunit CysD, at 38,414 to 39,364
_RS00195
ABZR87_RS00200: ABZR87_RS00200 - phosphoadenylyl-sulfate reductase, at 39,385 to 40,212
_RS00200
ABZR87_RS00205: ABZR87_RS00205 - DUF934 domain-containing protein, at 40,209 to 40,754
_RS00205
ABZR87_RS00210: ABZR87_RS00210 - nitrite/sulfite reductase, at 40,772 to 42,433
_RS00210
Position (kb)
39
40
41 Strain fitness (log2 ratio)
-1
0
1
2 at 38.421 kb on + strand at 38.697 kb on + strand, within ABZR87_RS00195 at 38.697 kb on + strand, within ABZR87_RS00195 at 38.698 kb on - strand, within ABZR87_RS00195 at 38.698 kb on - strand, within ABZR87_RS00195 at 38.733 kb on + strand, within ABZR87_RS00195 at 38.734 kb on - strand, within ABZR87_RS00195 at 38.811 kb on + strand, within ABZR87_RS00195 at 38.812 kb on - strand, within ABZR87_RS00195 at 39.279 kb on + strand at 39.279 kb on + strand at 39.279 kb on + strand at 39.280 kb on - strand at 39.280 kb on - strand at 39.280 kb on - strand at 39.546 kb on - strand, within ABZR87_RS00200 at 39.593 kb on + strand, within ABZR87_RS00200 at 39.635 kb on + strand, within ABZR87_RS00200 at 39.635 kb on + strand, within ABZR87_RS00200 at 39.806 kb on + strand, within ABZR87_RS00200 at 39.836 kb on + strand, within ABZR87_RS00200 at 39.836 kb on + strand, within ABZR87_RS00200 at 39.887 kb on + strand, within ABZR87_RS00200 at 40.131 kb on - strand at 40.131 kb on - strand at 40.131 kb on - strand at 40.276 kb on + strand, within ABZR87_RS00205 at 40.552 kb on - strand, within ABZR87_RS00205 at 40.552 kb on - strand, within ABZR87_RS00205 at 40.552 kb on - strand, within ABZR87_RS00205 at 40.830 kb on + strand at 40.830 kb on + strand at 40.830 kb on + strand at 40.831 kb on - strand at 40.872 kb on + strand at 41.005 kb on + strand, within ABZR87_RS00210 at 41.006 kb on - strand, within ABZR87_RS00210
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 38,421 + -1.1 38,697 + ABZR87_RS00195 0.30 +0.8 38,697 + ABZR87_RS00195 0.30 +0.3 38,698 - ABZR87_RS00195 0.30 +0.1 38,698 - ABZR87_RS00195 0.30 +0.3 38,733 + ABZR87_RS00195 0.34 +2.4 38,734 - ABZR87_RS00195 0.34 -0.3 38,811 + ABZR87_RS00195 0.42 -0.3 38,812 - ABZR87_RS00195 0.42 +1.7 39,279 + +0.0 39,279 + +1.6 39,279 + -0.2 39,280 - +0.5 39,280 - -1.5 39,280 - +0.8 39,546 - ABZR87_RS00200 0.19 +0.3 39,593 + ABZR87_RS00200 0.25 -0.6 39,635 + ABZR87_RS00200 0.30 -0.8 39,635 + ABZR87_RS00200 0.30 -0.3 39,806 + ABZR87_RS00200 0.51 -0.4 39,836 + ABZR87_RS00200 0.54 -1.0 39,836 + ABZR87_RS00200 0.54 -1.3 39,887 + ABZR87_RS00200 0.61 -0.8 40,131 - +0.3 40,131 - -0.5 40,131 - -0.5 40,276 + ABZR87_RS00205 0.12 -0.2 40,552 - ABZR87_RS00205 0.63 -1.4 40,552 - ABZR87_RS00205 0.63 +0.5 40,552 - ABZR87_RS00205 0.63 -0.7 40,830 + -0.5 40,830 + +0.7 40,830 + -0.9 40,831 - +0.1 40,872 + +0.2 41,005 + ABZR87_RS00210 0.14 -0.9 41,006 - ABZR87_RS00210 0.14 -1.0
Or see this region's nucleotide sequence