Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00080 and ABZR87_RS00085 overlap by 11 nucleotides ABZR87_RS00085 and ABZR87_RS00090 overlap by 4 nucleotides ABZR87_RS00090 and ABZR87_RS00095 overlap by 4 nucleotides
ABZR87_RS00080: ABZR87_RS00080 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 17,391 to 18,011
_RS00080
ABZR87_RS00085: ABZR87_RS00085 - ABC transporter ATP-binding protein, at 18,001 to 18,840
_RS00085
ABZR87_RS00090: ABZR87_RS00090 - iron ABC transporter permease, at 18,837 to 19,856
_RS00090
ABZR87_RS00095: ABZR87_RS00095 - TonB-dependent receptor, at 19,853 to 21,742
_RS00095
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.501 kb on - strand, within ABZR87_RS00085 at 18.862 kb on + strand at 18.862 kb on + strand at 18.862 kb on + strand at 18.863 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.933 kb on - strand at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.250 kb on - strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.917 kb on + strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.918 kb on - strand at 19.918 kb on - strand at 19.918 kb on - strand at 19.923 kb on + strand at 19.923 kb on + strand at 19.923 kb on + strand at 19.923 kb on + strand at 19.935 kb on + strand at 19.935 kb on + strand at 19.936 kb on - strand at 20.023 kb on - strand at 20.185 kb on + strand, within ABZR87_RS00095 at 20.186 kb on - strand, within ABZR87_RS00095 at 20.186 kb on - strand, within ABZR87_RS00095 at 20.186 kb on - strand, within ABZR87_RS00095 at 20.211 kb on + strand, within ABZR87_RS00095 at 20.212 kb on - strand, within ABZR87_RS00095 at 20.212 kb on - strand, within ABZR87_RS00095 at 20.212 kb on - strand, within ABZR87_RS00095 at 20.227 kb on - strand, within ABZR87_RS00095 at 20.277 kb on + strand, within ABZR87_RS00095 at 20.278 kb on - strand, within ABZR87_RS00095 at 20.278 kb on - strand, within ABZR87_RS00095 at 20.278 kb on - strand, within ABZR87_RS00095 at 20.322 kb on + strand, within ABZR87_RS00095 at 20.322 kb on + strand, within ABZR87_RS00095 at 20.323 kb on - strand, within ABZR87_RS00095 at 20.370 kb on + strand, within ABZR87_RS00095 at 20.371 kb on - strand, within ABZR87_RS00095 at 20.371 kb on - strand, within ABZR87_RS00095 at 20.371 kb on - strand, within ABZR87_RS00095 at 20.439 kb on + strand, within ABZR87_RS00095 at 20.439 kb on + strand, within ABZR87_RS00095 at 20.439 kb on + strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.530 kb on - strand, within ABZR87_RS00095 at 20.532 kb on + strand, within ABZR87_RS00095 at 20.532 kb on + strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.614 kb on - strand, within ABZR87_RS00095 at 20.622 kb on + strand, within ABZR87_RS00095 at 20.623 kb on - strand, within ABZR87_RS00095 at 20.644 kb on + strand, within ABZR87_RS00095 at 20.644 kb on + strand, within ABZR87_RS00095 at 20.655 kb on + strand, within ABZR87_RS00095 at 20.655 kb on + strand, within ABZR87_RS00095 at 20.655 kb on + strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 18,500 + ABZR87_RS00085 0.59 +0.5 18,500 + ABZR87_RS00085 0.59 -0.4 18,500 + ABZR87_RS00085 0.59 -1.2 18,500 + ABZR87_RS00085 0.59 -1.4 18,501 - ABZR87_RS00085 0.60 +0.3 18,862 + -0.2 18,862 + +0.8 18,862 + +1.2 18,863 - +0.4 18,894 - +0.1 18,894 - +2.8 18,894 - +0.4 18,894 - -1.1 18,933 - -1.0 19,112 - ABZR87_RS00090 0.27 -0.7 19,112 - ABZR87_RS00090 0.27 +0.7 19,112 - ABZR87_RS00090 0.27 -0.1 19,112 - ABZR87_RS00090 0.27 -0.9 19,112 - ABZR87_RS00090 0.27 -1.5 19,250 - ABZR87_RS00090 0.40 -0.2 19,561 + ABZR87_RS00090 0.71 -1.6 19,561 + ABZR87_RS00090 0.71 -0.4 19,561 + ABZR87_RS00090 0.71 -1.0 19,561 + ABZR87_RS00090 0.71 -0.5 19,561 + ABZR87_RS00090 0.71 -0.3 19,561 + ABZR87_RS00090 0.71 +0.2 19,917 + +0.4 19,917 + +0.5 19,917 + +0.4 19,918 - -1.7 19,918 - -1.0 19,918 - -0.3 19,923 + -1.2 19,923 + +0.4 19,923 + +0.6 19,923 + -0.2 19,935 + +0.8 19,935 + -3.0 19,936 - -0.5 20,023 - -0.2 20,185 + ABZR87_RS00095 0.18 -2.0 20,186 - ABZR87_RS00095 0.18 -0.5 20,186 - ABZR87_RS00095 0.18 +0.6 20,186 - ABZR87_RS00095 0.18 +0.4 20,211 + ABZR87_RS00095 0.19 -1.7 20,212 - ABZR87_RS00095 0.19 -0.7 20,212 - ABZR87_RS00095 0.19 +0.8 20,212 - ABZR87_RS00095 0.19 -0.0 20,227 - ABZR87_RS00095 0.20 -0.9 20,277 + ABZR87_RS00095 0.22 -0.6 20,278 - ABZR87_RS00095 0.22 +0.2 20,278 - ABZR87_RS00095 0.22 -1.6 20,278 - ABZR87_RS00095 0.22 -1.8 20,322 + ABZR87_RS00095 0.25 +1.8 20,322 + ABZR87_RS00095 0.25 -0.1 20,323 - ABZR87_RS00095 0.25 +0.1 20,370 + ABZR87_RS00095 0.27 -1.8 20,371 - ABZR87_RS00095 0.27 -1.2 20,371 - ABZR87_RS00095 0.27 +1.3 20,371 - ABZR87_RS00095 0.27 +0.0 20,439 + ABZR87_RS00095 0.31 -0.6 20,439 + ABZR87_RS00095 0.31 -0.8 20,439 + ABZR87_RS00095 0.31 +0.4 20,440 - ABZR87_RS00095 0.31 +0.6 20,440 - ABZR87_RS00095 0.31 +0.2 20,440 - ABZR87_RS00095 0.31 -0.2 20,440 - ABZR87_RS00095 0.31 +1.0 20,440 - ABZR87_RS00095 0.31 -0.7 20,440 - ABZR87_RS00095 0.31 -2.1 20,440 - ABZR87_RS00095 0.31 -0.6 20,440 - ABZR87_RS00095 0.31 -1.1 20,530 - ABZR87_RS00095 0.36 +0.7 20,532 + ABZR87_RS00095 0.36 +0.3 20,532 + ABZR87_RS00095 0.36 -0.1 20,533 - ABZR87_RS00095 0.36 -0.4 20,533 - ABZR87_RS00095 0.36 +0.1 20,533 - ABZR87_RS00095 0.36 -0.3 20,533 - ABZR87_RS00095 0.36 +0.7 20,533 - ABZR87_RS00095 0.36 +0.4 20,533 - ABZR87_RS00095 0.36 -1.1 20,614 - ABZR87_RS00095 0.40 +0.1 20,622 + ABZR87_RS00095 0.41 +0.3 20,623 - ABZR87_RS00095 0.41 -0.4 20,644 + ABZR87_RS00095 0.42 +0.2 20,644 + ABZR87_RS00095 0.42 -0.0 20,655 + ABZR87_RS00095 0.42 -1.2 20,655 + ABZR87_RS00095 0.42 +0.0 20,655 + ABZR87_RS00095 0.42 -0.3 20,656 - ABZR87_RS00095 0.42 -0.1 20,656 - ABZR87_RS00095 0.42 -2.2 20,656 - ABZR87_RS00095 0.42 +0.7 20,656 - ABZR87_RS00095 0.42 -0.9 20,656 - ABZR87_RS00095 0.42 +0.4 20,656 - ABZR87_RS00095 0.42 -1.2 20,656 - ABZR87_RS00095 0.42 -0.4
Or see this region's nucleotide sequence