Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00075 and ABZR87_RS00080 overlap by 1 nucleotides ABZR87_RS00080 and ABZR87_RS00085 overlap by 11 nucleotides ABZR87_RS00085 and ABZR87_RS00090 overlap by 4 nucleotides
ABZR87_RS00075: ABZR87_RS00075 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 16,327 to 17,391
_RS00075
ABZR87_RS00080: ABZR87_RS00080 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 17,391 to 18,011
_RS00080
ABZR87_RS00085: ABZR87_RS00085 - ABC transporter ATP-binding protein, at 18,001 to 18,840
_RS00085
ABZR87_RS00090: ABZR87_RS00090 - iron ABC transporter permease, at 18,837 to 19,856
_RS00090
Position (kb) 18
19 Strain fitness (log2 ratio) -1
0
1
2
3 at 17.322 kb on + strand at 17.322 kb on + strand at 17.392 kb on + strand at 17.393 kb on - strand at 17.572 kb on + strand, within ABZR87_RS00080 at 17.572 kb on + strand, within ABZR87_RS00080 at 17.573 kb on - strand, within ABZR87_RS00080 at 17.579 kb on - strand, within ABZR87_RS00080 at 17.710 kb on + strand, within ABZR87_RS00080 at 17.710 kb on + strand, within ABZR87_RS00080 at 17.710 kb on + strand, within ABZR87_RS00080 at 17.711 kb on - strand, within ABZR87_RS00080 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.501 kb on - strand, within ABZR87_RS00085 at 18.862 kb on + strand at 18.862 kb on + strand at 18.862 kb on + strand at 18.863 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.933 kb on - strand at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.250 kb on - strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 17,322 + +0.7 17,322 + -0.3 17,392 + +0.2 17,393 - -1.2 17,572 + ABZR87_RS00080 0.29 -0.3 17,572 + ABZR87_RS00080 0.29 -1.5 17,573 - ABZR87_RS00080 0.29 +0.9 17,579 - ABZR87_RS00080 0.30 +0.6 17,710 + ABZR87_RS00080 0.51 -0.6 17,710 + ABZR87_RS00080 0.51 -0.2 17,710 + ABZR87_RS00080 0.51 -0.2 17,711 - ABZR87_RS00080 0.52 -0.7 18,500 + ABZR87_RS00085 0.59 +0.5 18,500 + ABZR87_RS00085 0.59 -0.4 18,500 + ABZR87_RS00085 0.59 -1.2 18,500 + ABZR87_RS00085 0.59 -1.4 18,501 - ABZR87_RS00085 0.60 +0.3 18,862 + -0.2 18,862 + +0.8 18,862 + +1.2 18,863 - +0.4 18,894 - +0.1 18,894 - +2.8 18,894 - +0.4 18,894 - -1.1 18,933 - -1.0 19,112 - ABZR87_RS00090 0.27 -0.7 19,112 - ABZR87_RS00090 0.27 +0.7 19,112 - ABZR87_RS00090 0.27 -0.1 19,112 - ABZR87_RS00090 0.27 -0.9 19,112 - ABZR87_RS00090 0.27 -1.5 19,250 - ABZR87_RS00090 0.40 -0.2 19,561 + ABZR87_RS00090 0.71 -1.6 19,561 + ABZR87_RS00090 0.71 -0.4 19,561 + ABZR87_RS00090 0.71 -1.0 19,561 + ABZR87_RS00090 0.71 -0.5 19,561 + ABZR87_RS00090 0.71 -0.3 19,561 + ABZR87_RS00090 0.71 +0.2
Or see this region's nucleotide sequence