Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23145 and ABZR87_RS23150 are separated by 77 nucleotides ABZR87_RS23150 and ABZR87_RS23155 are separated by 256 nucleotides ABZR87_RS23155 and ABZR87_RS23160 are separated by 88 nucleotides
ABZR87_RS23145: ABZR87_RS23145 - FAD-binding oxidoreductase, at 1,555,220 to 1,556,473
_RS23145
ABZR87_RS23150: ABZR87_RS23150 - glutathione S-transferase family protein, at 1,556,551 to 1,557,210
_RS23150
ABZR87_RS23155: ABZR87_RS23155 - polyhydroxyalkanoate depolymerase, at 1,557,467 to 1,558,822
_RS23155
ABZR87_RS23160: ABZR87_RS23160 - hypothetical protein, at 1,558,911 to 1,560,110
_RS23160
Position (kb)
1557
1558
1559 Strain fitness (log2 ratio)
-2
-1
0
1 at 1556.471 kb on + strand at 1556.471 kb on + strand at 1556.472 kb on - strand at 1556.472 kb on - strand at 1556.472 kb on - strand at 1556.475 kb on + strand at 1556.501 kb on - strand at 1556.501 kb on - strand at 1556.501 kb on - strand at 1556.562 kb on + strand at 1556.648 kb on + strand, within ABZR87_RS23150 at 1556.649 kb on - strand, within ABZR87_RS23150 at 1556.681 kb on + strand, within ABZR87_RS23150 at 1556.681 kb on + strand, within ABZR87_RS23150 at 1556.681 kb on + strand, within ABZR87_RS23150 at 1556.681 kb on + strand, within ABZR87_RS23150 at 1556.682 kb on - strand, within ABZR87_RS23150 at 1556.682 kb on - strand, within ABZR87_RS23150 at 1556.682 kb on - strand, within ABZR87_RS23150 at 1556.712 kb on - strand, within ABZR87_RS23150 at 1556.759 kb on + strand, within ABZR87_RS23150 at 1557.211 kb on - strand at 1557.407 kb on + strand at 1557.407 kb on + strand at 1557.407 kb on + strand at 1557.407 kb on + strand at 1557.407 kb on + strand at 1557.408 kb on - strand at 1557.408 kb on - strand at 1557.408 kb on - strand at 1557.408 kb on - strand at 1557.491 kb on + strand at 1557.863 kb on + strand, within ABZR87_RS23155 at 1557.864 kb on - strand, within ABZR87_RS23155 at 1557.864 kb on - strand, within ABZR87_RS23155 at 1557.864 kb on - strand, within ABZR87_RS23155 at 1557.929 kb on + strand, within ABZR87_RS23155 at 1557.929 kb on + strand, within ABZR87_RS23155 at 1557.930 kb on - strand, within ABZR87_RS23155 at 1557.930 kb on - strand, within ABZR87_RS23155 at 1557.930 kb on - strand, within ABZR87_RS23155 at 1557.930 kb on - strand, within ABZR87_RS23155 at 1557.981 kb on + strand, within ABZR87_RS23155 at 1557.982 kb on - strand, within ABZR87_RS23155 at 1558.286 kb on + strand, within ABZR87_RS23155 at 1558.286 kb on + strand, within ABZR87_RS23155 at 1558.286 kb on + strand, within ABZR87_RS23155 at 1558.286 kb on + strand, within ABZR87_RS23155 at 1558.286 kb on + strand, within ABZR87_RS23155 at 1558.287 kb on - strand, within ABZR87_RS23155 at 1558.287 kb on - strand, within ABZR87_RS23155 at 1558.290 kb on - strand, within ABZR87_RS23155 at 1558.340 kb on + strand, within ABZR87_RS23155 at 1558.349 kb on + strand, within ABZR87_RS23155 at 1558.415 kb on + strand, within ABZR87_RS23155 at 1558.415 kb on + strand, within ABZR87_RS23155 at 1558.415 kb on + strand, within ABZR87_RS23155 at 1558.613 kb on + strand, within ABZR87_RS23155 at 1558.614 kb on - strand, within ABZR87_RS23155 at 1558.614 kb on - strand, within ABZR87_RS23155 at 1558.652 kb on + strand, within ABZR87_RS23155 at 1558.854 kb on + strand at 1558.985 kb on + strand at 1558.985 kb on + strand at 1558.986 kb on - strand at 1559.028 kb on + strand at 1559.029 kb on - strand at 1559.029 kb on - strand at 1559.058 kb on + strand, within ABZR87_RS23160 at 1559.058 kb on + strand, within ABZR87_RS23160 at 1559.058 kb on + strand, within ABZR87_RS23160 at 1559.059 kb on - strand, within ABZR87_RS23160 at 1559.059 kb on - strand, within ABZR87_RS23160 at 1559.137 kb on - strand, within ABZR87_RS23160 at 1559.137 kb on - strand, within ABZR87_RS23160 at 1559.219 kb on - strand, within ABZR87_RS23160 at 1559.222 kb on + strand, within ABZR87_RS23160 at 1559.233 kb on - strand, within ABZR87_RS23160 at 1559.233 kb on - strand, within ABZR87_RS23160 at 1559.250 kb on + strand, within ABZR87_RS23160 at 1559.250 kb on + strand, within ABZR87_RS23160 at 1559.250 kb on + strand, within ABZR87_RS23160 at 1559.250 kb on + strand, within ABZR87_RS23160 at 1559.251 kb on - strand, within ABZR87_RS23160 at 1559.251 kb on - strand, within ABZR87_RS23160 at 1559.251 kb on - strand, within ABZR87_RS23160 at 1559.307 kb on + strand, within ABZR87_RS23160 at 1559.308 kb on - strand, within ABZR87_RS23160 at 1559.308 kb on - strand, within ABZR87_RS23160 at 1559.568 kb on + strand, within ABZR87_RS23160 at 1559.568 kb on + strand, within ABZR87_RS23160 at 1559.568 kb on + strand, within ABZR87_RS23160 at 1559.569 kb on - strand, within ABZR87_RS23160 at 1559.569 kb on - strand, within ABZR87_RS23160 at 1559.613 kb on + strand, within ABZR87_RS23160 at 1559.614 kb on - strand, within ABZR87_RS23160 at 1559.614 kb on - strand, within ABZR87_RS23160 at 1559.763 kb on + strand, within ABZR87_RS23160
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,556,471 + +0.1 1,556,471 + -0.1 1,556,472 - -0.8 1,556,472 - -2.5 1,556,472 - -0.9 1,556,475 + +0.4 1,556,501 - +1.2 1,556,501 - -0.4 1,556,501 - -0.5 1,556,562 + +0.3 1,556,648 + ABZR87_RS23150 0.15 -0.0 1,556,649 - ABZR87_RS23150 0.15 +1.2 1,556,681 + ABZR87_RS23150 0.20 +0.7 1,556,681 + ABZR87_RS23150 0.20 -0.2 1,556,681 + ABZR87_RS23150 0.20 +0.1 1,556,681 + ABZR87_RS23150 0.20 +0.0 1,556,682 - ABZR87_RS23150 0.20 -0.3 1,556,682 - ABZR87_RS23150 0.20 +0.4 1,556,682 - ABZR87_RS23150 0.20 +0.2 1,556,712 - ABZR87_RS23150 0.24 +0.2 1,556,759 + ABZR87_RS23150 0.32 +1.1 1,557,211 - +0.1 1,557,407 + -1.5 1,557,407 + +0.3 1,557,407 + -0.6 1,557,407 + -0.6 1,557,407 + -1.7 1,557,408 - -1.3 1,557,408 - -0.1 1,557,408 - -1.3 1,557,408 - +0.9 1,557,491 + -1.5 1,557,863 + ABZR87_RS23155 0.29 +0.1 1,557,864 - ABZR87_RS23155 0.29 +0.7 1,557,864 - ABZR87_RS23155 0.29 -0.0 1,557,864 - ABZR87_RS23155 0.29 +0.5 1,557,929 + ABZR87_RS23155 0.34 -0.3 1,557,929 + ABZR87_RS23155 0.34 +0.4 1,557,930 - ABZR87_RS23155 0.34 -0.4 1,557,930 - ABZR87_RS23155 0.34 -1.3 1,557,930 - ABZR87_RS23155 0.34 +0.4 1,557,930 - ABZR87_RS23155 0.34 -0.7 1,557,981 + ABZR87_RS23155 0.38 -0.3 1,557,982 - ABZR87_RS23155 0.38 +1.0 1,558,286 + ABZR87_RS23155 0.60 -0.0 1,558,286 + ABZR87_RS23155 0.60 -1.1 1,558,286 + ABZR87_RS23155 0.60 -0.9 1,558,286 + ABZR87_RS23155 0.60 +0.1 1,558,286 + ABZR87_RS23155 0.60 +0.7 1,558,287 - ABZR87_RS23155 0.60 -0.0 1,558,287 - ABZR87_RS23155 0.60 +0.5 1,558,290 - ABZR87_RS23155 0.61 +0.6 1,558,340 + ABZR87_RS23155 0.64 -0.3 1,558,349 + ABZR87_RS23155 0.65 +0.2 1,558,415 + ABZR87_RS23155 0.70 +0.3 1,558,415 + ABZR87_RS23155 0.70 +0.5 1,558,415 + ABZR87_RS23155 0.70 +0.6 1,558,613 + ABZR87_RS23155 0.85 -2.0 1,558,614 - ABZR87_RS23155 0.85 -0.5 1,558,614 - ABZR87_RS23155 0.85 -0.1 1,558,652 + ABZR87_RS23155 0.87 -0.6 1,558,854 + +0.5 1,558,985 + -1.2 1,558,985 + +0.0 1,558,986 - +0.5 1,559,028 + -0.5 1,559,029 - -0.5 1,559,029 - +0.7 1,559,058 + ABZR87_RS23160 0.12 -0.1 1,559,058 + ABZR87_RS23160 0.12 -1.0 1,559,058 + ABZR87_RS23160 0.12 -0.2 1,559,059 - ABZR87_RS23160 0.12 +1.0 1,559,059 - ABZR87_RS23160 0.12 -2.2 1,559,137 - ABZR87_RS23160 0.19 -0.4 1,559,137 - ABZR87_RS23160 0.19 -0.6 1,559,219 - ABZR87_RS23160 0.26 +0.6 1,559,222 + ABZR87_RS23160 0.26 +1.0 1,559,233 - ABZR87_RS23160 0.27 +0.3 1,559,233 - ABZR87_RS23160 0.27 +0.1 1,559,250 + ABZR87_RS23160 0.28 +0.4 1,559,250 + ABZR87_RS23160 0.28 +0.1 1,559,250 + ABZR87_RS23160 0.28 -0.0 1,559,250 + ABZR87_RS23160 0.28 +0.7 1,559,251 - ABZR87_RS23160 0.28 +0.3 1,559,251 - ABZR87_RS23160 0.28 -1.6 1,559,251 - ABZR87_RS23160 0.28 +0.0 1,559,307 + ABZR87_RS23160 0.33 -0.2 1,559,308 - ABZR87_RS23160 0.33 -0.0 1,559,308 - ABZR87_RS23160 0.33 -0.9 1,559,568 + ABZR87_RS23160 0.55 -0.2 1,559,568 + ABZR87_RS23160 0.55 -0.5 1,559,568 + ABZR87_RS23160 0.55 -0.2 1,559,569 - ABZR87_RS23160 0.55 -0.0 1,559,569 - ABZR87_RS23160 0.55 -0.7 1,559,613 + ABZR87_RS23160 0.58 +0.9 1,559,614 - ABZR87_RS23160 0.59 -1.3 1,559,614 - ABZR87_RS23160 0.59 -0.6 1,559,763 + ABZR87_RS23160 0.71 -1.3
Or see this region's nucleotide sequence