Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22825 and ABZR87_RS22830 overlap by 4 nucleotides ABZR87_RS22830 and ABZR87_RS22835 overlap by 1 nucleotides ABZR87_RS22835 and ABZR87_RS22840 are separated by 45 nucleotides ABZR87_RS22840 and ABZR87_RS22845 are separated by 35 nucleotides
ABZR87_RS22825: ABZR87_RS22825 - 2-dehydropantoate 2-reductase, at 1,483,287 to 1,484,300
_RS22825
ABZR87_RS22830: ABZR87_RS22830 - Crp/Fnr family transcriptional regulator, at 1,484,297 to 1,484,986
_RS22830
ABZR87_RS22835: ABZR87_RS22835 - 2OG-Fe(II) oxygenase, at 1,484,986 to 1,485,378
_RS22835
ABZR87_RS22840: ABZR87_RS22840 - DUF2164 domain-containing protein, at 1,485,424 to 1,485,687
_RS22840
ABZR87_RS22845: ABZR87_RS22845 - alpha,alpha-trehalase TreA, at 1,485,723 to 1,487,336
_RS22845
Position (kb)
1484
1485
1486 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1484.298 kb on + strand at 1484.361 kb on + strand at 1484.361 kb on + strand at 1484.577 kb on + strand, within ABZR87_RS22830 at 1484.577 kb on + strand, within ABZR87_RS22830 at 1485.047 kb on + strand, within ABZR87_RS22835 at 1485.047 kb on + strand, within ABZR87_RS22835 at 1485.048 kb on - strand, within ABZR87_RS22835 at 1485.048 kb on - strand, within ABZR87_RS22835 at 1485.048 kb on - strand, within ABZR87_RS22835 at 1485.050 kb on - strand, within ABZR87_RS22835 at 1485.261 kb on - strand, within ABZR87_RS22835 at 1485.311 kb on + strand, within ABZR87_RS22835 at 1485.414 kb on + strand at 1485.426 kb on - strand at 1485.479 kb on + strand, within ABZR87_RS22840 at 1485.479 kb on + strand, within ABZR87_RS22840 at 1485.480 kb on - strand, within ABZR87_RS22840 at 1485.539 kb on + strand, within ABZR87_RS22840 at 1485.629 kb on + strand, within ABZR87_RS22840 at 1485.629 kb on + strand, within ABZR87_RS22840 at 1485.724 kb on + strand at 1485.724 kb on + strand at 1485.725 kb on - strand at 1485.725 kb on - strand at 1485.725 kb on - strand at 1485.739 kb on + strand at 1485.740 kb on - strand at 1485.740 kb on - strand at 1485.799 kb on + strand at 1485.800 kb on - strand at 1485.842 kb on - strand at 1485.872 kb on - strand at 1485.872 kb on - strand at 1485.872 kb on - strand at 1486.114 kb on + strand, within ABZR87_RS22845 at 1486.115 kb on - strand, within ABZR87_RS22845 at 1486.115 kb on - strand, within ABZR87_RS22845 at 1486.174 kb on + strand, within ABZR87_RS22845 at 1486.240 kb on + strand, within ABZR87_RS22845
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,484,298 + -0.4 1,484,361 + -3.1 1,484,361 + -1.1 1,484,577 + ABZR87_RS22830 0.41 -0.7 1,484,577 + ABZR87_RS22830 0.41 -0.9 1,485,047 + ABZR87_RS22835 0.16 +0.1 1,485,047 + ABZR87_RS22835 0.16 -0.2 1,485,048 - ABZR87_RS22835 0.16 -0.7 1,485,048 - ABZR87_RS22835 0.16 -0.4 1,485,048 - ABZR87_RS22835 0.16 +0.0 1,485,050 - ABZR87_RS22835 0.16 +0.3 1,485,261 - ABZR87_RS22835 0.70 -1.0 1,485,311 + ABZR87_RS22835 0.83 -1.6 1,485,414 + -0.3 1,485,426 - -0.4 1,485,479 + ABZR87_RS22840 0.21 +0.1 1,485,479 + ABZR87_RS22840 0.21 -0.2 1,485,480 - ABZR87_RS22840 0.21 +0.6 1,485,539 + ABZR87_RS22840 0.44 +0.3 1,485,629 + ABZR87_RS22840 0.78 +1.0 1,485,629 + ABZR87_RS22840 0.78 -1.4 1,485,724 + +0.1 1,485,724 + -2.1 1,485,725 - -0.6 1,485,725 - +2.6 1,485,725 - +0.5 1,485,739 + -1.1 1,485,740 - +3.6 1,485,740 - -2.4 1,485,799 + +0.5 1,485,800 - -2.4 1,485,842 - -0.7 1,485,872 - -0.2 1,485,872 - -0.3 1,485,872 - -0.2 1,486,114 + ABZR87_RS22845 0.24 +1.4 1,486,115 - ABZR87_RS22845 0.24 -1.5 1,486,115 - ABZR87_RS22845 0.24 +1.9 1,486,174 + ABZR87_RS22845 0.28 +0.3 1,486,240 + ABZR87_RS22845 0.32 +0.5
Or see this region's nucleotide sequence