Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22820 and ABZR87_RS22825 are separated by 27 nucleotides ABZR87_RS22825 and ABZR87_RS22830 overlap by 4 nucleotides ABZR87_RS22830 and ABZR87_RS22835 overlap by 1 nucleotides
ABZR87_RS22820: ABZR87_RS22820 - alkaline phosphatase D family protein, at 1,481,634 to 1,483,259
_RS22820
ABZR87_RS22825: ABZR87_RS22825 - 2-dehydropantoate 2-reductase, at 1,483,287 to 1,484,300
_RS22825
ABZR87_RS22830: ABZR87_RS22830 - Crp/Fnr family transcriptional regulator, at 1,484,297 to 1,484,986
_RS22830
ABZR87_RS22835: ABZR87_RS22835 - 2OG-Fe(II) oxygenase, at 1,484,986 to 1,485,378
_RS22835
Position (kb) 1483
1484
1485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1482.331 kb on - strand, within ABZR87_RS22820 at 1482.348 kb on + strand, within ABZR87_RS22820 at 1482.349 kb on - strand, within ABZR87_RS22820 at 1482.378 kb on + strand, within ABZR87_RS22820 at 1482.379 kb on - strand, within ABZR87_RS22820 at 1482.456 kb on + strand, within ABZR87_RS22820 at 1482.456 kb on + strand, within ABZR87_RS22820 at 1482.463 kb on + strand, within ABZR87_RS22820 at 1482.493 kb on - strand, within ABZR87_RS22820 at 1482.495 kb on + strand, within ABZR87_RS22820 at 1482.624 kb on + strand, within ABZR87_RS22820 at 1482.625 kb on - strand, within ABZR87_RS22820 at 1482.625 kb on - strand, within ABZR87_RS22820 at 1482.763 kb on - strand, within ABZR87_RS22820 at 1482.763 kb on - strand, within ABZR87_RS22820 at 1483.133 kb on + strand at 1483.134 kb on - strand at 1483.134 kb on - strand at 1483.134 kb on - strand at 1483.236 kb on + strand at 1483.236 kb on + strand at 1483.236 kb on + strand at 1483.237 kb on - strand at 1483.237 kb on - strand at 1483.329 kb on + strand at 1483.330 kb on - strand at 1483.330 kb on - strand at 1483.330 kb on - strand at 1483.432 kb on - strand, within ABZR87_RS22825 at 1483.473 kb on + strand, within ABZR87_RS22825 at 1483.473 kb on + strand, within ABZR87_RS22825 at 1483.473 kb on + strand, within ABZR87_RS22825 at 1483.473 kb on + strand, within ABZR87_RS22825 at 1483.474 kb on - strand, within ABZR87_RS22825 at 1483.474 kb on - strand, within ABZR87_RS22825 at 1483.474 kb on - strand, within ABZR87_RS22825 at 1484.298 kb on + strand at 1484.361 kb on + strand at 1484.361 kb on + strand at 1484.577 kb on + strand, within ABZR87_RS22830 at 1484.577 kb on + strand, within ABZR87_RS22830 at 1485.047 kb on + strand, within ABZR87_RS22835 at 1485.047 kb on + strand, within ABZR87_RS22835 at 1485.048 kb on - strand, within ABZR87_RS22835 at 1485.048 kb on - strand, within ABZR87_RS22835 at 1485.048 kb on - strand, within ABZR87_RS22835 at 1485.050 kb on - strand, within ABZR87_RS22835 at 1485.261 kb on - strand, within ABZR87_RS22835
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,482,331 - ABZR87_RS22820 0.43 -0.2 1,482,348 + ABZR87_RS22820 0.44 -0.4 1,482,349 - ABZR87_RS22820 0.44 -1.2 1,482,378 + ABZR87_RS22820 0.46 +2.2 1,482,379 - ABZR87_RS22820 0.46 -0.1 1,482,456 + ABZR87_RS22820 0.51 +0.3 1,482,456 + ABZR87_RS22820 0.51 -1.0 1,482,463 + ABZR87_RS22820 0.51 -0.0 1,482,493 - ABZR87_RS22820 0.53 +1.6 1,482,495 + ABZR87_RS22820 0.53 -0.7 1,482,624 + ABZR87_RS22820 0.61 -1.6 1,482,625 - ABZR87_RS22820 0.61 -0.6 1,482,625 - ABZR87_RS22820 0.61 +0.0 1,482,763 - ABZR87_RS22820 0.69 -1.5 1,482,763 - ABZR87_RS22820 0.69 -0.1 1,483,133 + -1.1 1,483,134 - -0.0 1,483,134 - +0.4 1,483,134 - +0.4 1,483,236 + -0.0 1,483,236 + -0.5 1,483,236 + -0.1 1,483,237 - +0.4 1,483,237 - -1.0 1,483,329 + +0.5 1,483,330 - +0.0 1,483,330 - -1.5 1,483,330 - +1.5 1,483,432 - ABZR87_RS22825 0.14 -0.6 1,483,473 + ABZR87_RS22825 0.18 +0.0 1,483,473 + ABZR87_RS22825 0.18 -1.2 1,483,473 + ABZR87_RS22825 0.18 -1.3 1,483,473 + ABZR87_RS22825 0.18 -0.3 1,483,474 - ABZR87_RS22825 0.18 +0.0 1,483,474 - ABZR87_RS22825 0.18 -0.1 1,483,474 - ABZR87_RS22825 0.18 -0.7 1,484,298 + -0.4 1,484,361 + -3.1 1,484,361 + -1.1 1,484,577 + ABZR87_RS22830 0.41 -0.7 1,484,577 + ABZR87_RS22830 0.41 -0.9 1,485,047 + ABZR87_RS22835 0.16 +0.1 1,485,047 + ABZR87_RS22835 0.16 -0.2 1,485,048 - ABZR87_RS22835 0.16 -0.7 1,485,048 - ABZR87_RS22835 0.16 -0.4 1,485,048 - ABZR87_RS22835 0.16 +0.0 1,485,050 - ABZR87_RS22835 0.16 +0.3 1,485,261 - ABZR87_RS22835 0.70 -1.0
Or see this region's nucleotide sequence