Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22640 and ABZR87_RS22645 are separated by 237 nucleotides ABZR87_RS22645 and ABZR87_RS22650 are separated by 379 nucleotides ABZR87_RS22650 and ABZR87_RS22655 overlap by 4 nucleotides
ABZR87_RS22640: ABZR87_RS22640 - hypothetical protein, at 1,436,867 to 1,437,151
_RS22640
ABZR87_RS22645: ABZR87_RS22645 - hypothetical protein, at 1,437,389 to 1,437,619
_RS22645
ABZR87_RS22650: ABZR87_RS22650 - PgaD family protein, at 1,437,999 to 1,439,009
_RS22650
ABZR87_RS22655: ABZR87_RS22655 - poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 1,439,006 to 1,440,292
_RS22655
Position (kb)
1437
1438
1439
1440 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1437.270 kb on - strand at 1437.270 kb on - strand at 1437.308 kb on + strand at 1437.309 kb on - strand at 1437.457 kb on - strand, within ABZR87_RS22645 at 1437.457 kb on - strand, within ABZR87_RS22645 at 1437.480 kb on + strand, within ABZR87_RS22645 at 1437.480 kb on + strand, within ABZR87_RS22645 at 1437.684 kb on - strand at 1437.759 kb on + strand at 1437.759 kb on + strand at 1437.759 kb on + strand at 1437.759 kb on + strand at 1437.760 kb on - strand at 1437.760 kb on - strand at 1437.760 kb on - strand at 1438.000 kb on + strand at 1438.000 kb on + strand at 1438.000 kb on + strand at 1438.001 kb on - strand at 1438.001 kb on - strand at 1438.228 kb on + strand, within ABZR87_RS22650 at 1438.228 kb on + strand, within ABZR87_RS22650 at 1438.228 kb on + strand, within ABZR87_RS22650 at 1438.229 kb on - strand, within ABZR87_RS22650 at 1438.477 kb on + strand, within ABZR87_RS22650 at 1438.761 kb on + strand, within ABZR87_RS22650 at 1438.761 kb on + strand, within ABZR87_RS22650 at 1438.761 kb on + strand, within ABZR87_RS22650 at 1438.762 kb on - strand, within ABZR87_RS22650 at 1438.762 kb on - strand, within ABZR87_RS22650 at 1438.762 kb on - strand, within ABZR87_RS22650 at 1438.762 kb on - strand, within ABZR87_RS22650 at 1438.798 kb on + strand, within ABZR87_RS22650 at 1438.798 kb on + strand, within ABZR87_RS22650 at 1438.799 kb on - strand, within ABZR87_RS22650 at 1438.799 kb on - strand, within ABZR87_RS22650 at 1438.799 kb on - strand, within ABZR87_RS22650 at 1438.853 kb on - strand, within ABZR87_RS22650 at 1438.861 kb on + strand, within ABZR87_RS22650 at 1438.861 kb on + strand, within ABZR87_RS22650 at 1438.861 kb on + strand, within ABZR87_RS22650 at 1438.862 kb on - strand, within ABZR87_RS22650 at 1438.862 kb on - strand, within ABZR87_RS22650 at 1438.862 kb on - strand, within ABZR87_RS22650 at 1438.862 kb on - strand, within ABZR87_RS22650 at 1438.862 kb on - strand, within ABZR87_RS22650 at 1438.923 kb on + strand at 1438.924 kb on - strand at 1438.938 kb on - strand at 1439.075 kb on - strand at 1439.166 kb on + strand, within ABZR87_RS22655 at 1439.166 kb on + strand, within ABZR87_RS22655 at 1439.343 kb on + strand, within ABZR87_RS22655 at 1439.344 kb on - strand, within ABZR87_RS22655 at 1439.344 kb on - strand, within ABZR87_RS22655 at 1439.344 kb on - strand, within ABZR87_RS22655 at 1439.367 kb on + strand, within ABZR87_RS22655 at 1439.367 kb on + strand, within ABZR87_RS22655 at 1439.367 kb on + strand, within ABZR87_RS22655 at 1439.368 kb on - strand, within ABZR87_RS22655 at 1439.475 kb on + strand, within ABZR87_RS22655 at 1439.475 kb on + strand, within ABZR87_RS22655 at 1439.475 kb on + strand, within ABZR87_RS22655 at 1439.530 kb on - strand, within ABZR87_RS22655 at 1439.673 kb on + strand, within ABZR87_RS22655 at 1439.674 kb on - strand, within ABZR87_RS22655
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,437,270 - -0.3 1,437,270 - +0.4 1,437,308 + -0.8 1,437,309 - -0.2 1,437,457 - ABZR87_RS22645 0.29 +1.5 1,437,457 - ABZR87_RS22645 0.29 +0.3 1,437,480 + ABZR87_RS22645 0.39 +1.5 1,437,480 + ABZR87_RS22645 0.39 +0.3 1,437,684 - +0.5 1,437,759 + +0.5 1,437,759 + +0.4 1,437,759 + +0.1 1,437,759 + -0.5 1,437,760 - -0.4 1,437,760 - +2.0 1,437,760 - +1.6 1,438,000 + +0.3 1,438,000 + -0.3 1,438,000 + -0.8 1,438,001 - +0.4 1,438,001 - +0.6 1,438,228 + ABZR87_RS22650 0.23 +1.2 1,438,228 + ABZR87_RS22650 0.23 +0.8 1,438,228 + ABZR87_RS22650 0.23 +0.8 1,438,229 - ABZR87_RS22650 0.23 +0.1 1,438,477 + ABZR87_RS22650 0.47 +1.1 1,438,761 + ABZR87_RS22650 0.75 -0.4 1,438,761 + ABZR87_RS22650 0.75 +0.6 1,438,761 + ABZR87_RS22650 0.75 -1.0 1,438,762 - ABZR87_RS22650 0.75 +0.1 1,438,762 - ABZR87_RS22650 0.75 -0.6 1,438,762 - ABZR87_RS22650 0.75 +0.8 1,438,762 - ABZR87_RS22650 0.75 -0.2 1,438,798 + ABZR87_RS22650 0.79 -1.1 1,438,798 + ABZR87_RS22650 0.79 -0.2 1,438,799 - ABZR87_RS22650 0.79 +1.2 1,438,799 - ABZR87_RS22650 0.79 +0.5 1,438,799 - ABZR87_RS22650 0.79 +0.8 1,438,853 - ABZR87_RS22650 0.84 +1.2 1,438,861 + ABZR87_RS22650 0.85 -0.2 1,438,861 + ABZR87_RS22650 0.85 +0.1 1,438,861 + ABZR87_RS22650 0.85 +0.6 1,438,862 - ABZR87_RS22650 0.85 -0.2 1,438,862 - ABZR87_RS22650 0.85 +0.5 1,438,862 - ABZR87_RS22650 0.85 +0.6 1,438,862 - ABZR87_RS22650 0.85 +0.2 1,438,862 - ABZR87_RS22650 0.85 +1.0 1,438,923 + +0.0 1,438,924 - -0.1 1,438,938 - +0.0 1,439,075 - +0.3 1,439,166 + ABZR87_RS22655 0.12 -0.2 1,439,166 + ABZR87_RS22655 0.12 +0.0 1,439,343 + ABZR87_RS22655 0.26 -1.4 1,439,344 - ABZR87_RS22655 0.26 -0.1 1,439,344 - ABZR87_RS22655 0.26 +1.6 1,439,344 - ABZR87_RS22655 0.26 -0.3 1,439,367 + ABZR87_RS22655 0.28 +0.6 1,439,367 + ABZR87_RS22655 0.28 +0.4 1,439,367 + ABZR87_RS22655 0.28 +0.4 1,439,368 - ABZR87_RS22655 0.28 -0.2 1,439,475 + ABZR87_RS22655 0.36 -0.5 1,439,475 + ABZR87_RS22655 0.36 +0.2 1,439,475 + ABZR87_RS22655 0.36 -0.3 1,439,530 - ABZR87_RS22655 0.41 +0.2 1,439,673 + ABZR87_RS22655 0.52 -2.0 1,439,674 - ABZR87_RS22655 0.52 -0.0
Or see this region's nucleotide sequence