Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22585

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22575 and ABZR87_RS22580 are separated by 32 nucleotidesABZR87_RS22580 and ABZR87_RS22585 are separated by 11 nucleotidesABZR87_RS22585 and ABZR87_RS22590 overlap by 1 nucleotides ABZR87_RS22575: ABZR87_RS22575 - response regulator, at 1,421,898 to 1,422,263 _RS22575 ABZR87_RS22580: ABZR87_RS22580 - hypothetical protein, at 1,422,296 to 1,422,829 _RS22580 ABZR87_RS22585: ABZR87_RS22585 - methyl-accepting chemotaxis protein, at 1,422,841 to 1,423,557 _RS22585 ABZR87_RS22590: ABZR87_RS22590 - ATP-binding protein, at 1,423,557 to 1,425,941 _RS22590 Position (kb) 1422 1423 1424Strain fitness (log2 ratio) -2 -1 0 1at 1422.267 kb on + strandat 1422.268 kb on - strandat 1422.268 kb on - strandat 1422.486 kb on + strand, within ABZR87_RS22580at 1422.486 kb on + strand, within ABZR87_RS22580at 1422.486 kb on + strand, within ABZR87_RS22580at 1422.486 kb on + strand, within ABZR87_RS22580at 1422.486 kb on + strand, within ABZR87_RS22580at 1422.487 kb on - strand, within ABZR87_RS22580at 1422.487 kb on - strand, within ABZR87_RS22580at 1422.487 kb on - strand, within ABZR87_RS22580at 1422.487 kb on - strand, within ABZR87_RS22580at 1422.773 kb on - strand, within ABZR87_RS22580at 1422.843 kb on - strandat 1423.296 kb on + strand, within ABZR87_RS22585at 1423.390 kb on - strand, within ABZR87_RS22585at 1423.819 kb on + strand, within ABZR87_RS22590at 1423.819 kb on + strand, within ABZR87_RS22590at 1423.819 kb on + strand, within ABZR87_RS22590at 1423.819 kb on + strand, within ABZR87_RS22590at 1423.820 kb on - strand, within ABZR87_RS22590at 1423.820 kb on - strand, within ABZR87_RS22590at 1424.196 kb on + strand, within ABZR87_RS22590at 1424.196 kb on + strand, within ABZR87_RS22590at 1424.197 kb on - strand, within ABZR87_RS22590at 1424.197 kb on - strand, within ABZR87_RS22590at 1424.491 kb on + strand, within ABZR87_RS22590at 1424.491 kb on + strand, within ABZR87_RS22590at 1424.492 kb on - strand, within ABZR87_RS22590at 1424.539 kb on + strand, within ABZR87_RS22590

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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1,422,267 + +0.5
1,422,268 - -2.1
1,422,268 - +0.1
1,422,486 + ABZR87_RS22580 0.36 -0.8
1,422,486 + ABZR87_RS22580 0.36 -0.2
1,422,486 + ABZR87_RS22580 0.36 -0.2
1,422,486 + ABZR87_RS22580 0.36 +1.0
1,422,486 + ABZR87_RS22580 0.36 -0.9
1,422,487 - ABZR87_RS22580 0.36 +0.3
1,422,487 - ABZR87_RS22580 0.36 -1.5
1,422,487 - ABZR87_RS22580 0.36 +0.3
1,422,487 - ABZR87_RS22580 0.36 +0.3
1,422,773 - ABZR87_RS22580 0.89 +0.2
1,422,843 - -0.4
1,423,296 + ABZR87_RS22585 0.63 +0.3
1,423,390 - ABZR87_RS22585 0.77 +0.7
1,423,819 + ABZR87_RS22590 0.11 -0.5
1,423,819 + ABZR87_RS22590 0.11 -0.1
1,423,819 + ABZR87_RS22590 0.11 -0.5
1,423,819 + ABZR87_RS22590 0.11 +1.1
1,423,820 - ABZR87_RS22590 0.11 +0.1
1,423,820 - ABZR87_RS22590 0.11 -0.4
1,424,196 + ABZR87_RS22590 0.27 +0.0
1,424,196 + ABZR87_RS22590 0.27 +0.1
1,424,197 - ABZR87_RS22590 0.27 +0.3
1,424,197 - ABZR87_RS22590 0.27 -0.2
1,424,491 + ABZR87_RS22590 0.39 +0.4
1,424,491 + ABZR87_RS22590 0.39 +0.3
1,424,492 - ABZR87_RS22590 0.39 +0.3
1,424,539 + ABZR87_RS22590 0.41 -0.5

Or see this region's nucleotide sequence