Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22410 and ABZR87_RS22415 are separated by 92 nucleotides ABZR87_RS22415 and ABZR87_RS22420 are separated by 115 nucleotides ABZR87_RS22420 and ABZR87_RS22425 are separated by 57 nucleotides
ABZR87_RS22410: ABZR87_RS22410 - LysR family transcriptional regulator, at 1,387,347 to 1,388,246
_RS22410
ABZR87_RS22415: ABZR87_RS22415 - universal stress protein, at 1,388,339 to 1,388,806
_RS22415
ABZR87_RS22420: ABZR87_RS22420 - nuclear transport factor 2 family protein, at 1,388,922 to 1,389,365
_RS22420
ABZR87_RS22425: ABZR87_RS22425 - nitronate monooxygenase family protein, at 1,389,423 to 1,390,427
_RS22425
Position (kb)
1388
1389
1390 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1387.959 kb on + strand, within ABZR87_RS22410 at 1387.960 kb on - strand, within ABZR87_RS22410 at 1387.960 kb on - strand, within ABZR87_RS22410 at 1388.148 kb on + strand, within ABZR87_RS22410 at 1388.148 kb on + strand, within ABZR87_RS22410 at 1388.148 kb on + strand, within ABZR87_RS22410 at 1388.148 kb on + strand, within ABZR87_RS22410 at 1388.148 kb on + strand, within ABZR87_RS22410 at 1388.148 kb on + strand, within ABZR87_RS22410 at 1388.149 kb on - strand, within ABZR87_RS22410 at 1388.149 kb on - strand, within ABZR87_RS22410 at 1388.149 kb on - strand, within ABZR87_RS22410 at 1388.149 kb on - strand, within ABZR87_RS22410 at 1388.149 kb on - strand, within ABZR87_RS22410 at 1388.149 kb on - strand, within ABZR87_RS22410 at 1388.149 kb on - strand, within ABZR87_RS22410 at 1388.149 kb on - strand, within ABZR87_RS22410 at 1388.149 kb on - strand, within ABZR87_RS22410 at 1388.299 kb on + strand at 1388.299 kb on + strand at 1388.299 kb on + strand at 1388.299 kb on + strand at 1388.300 kb on - strand at 1388.300 kb on - strand at 1388.300 kb on - strand at 1388.490 kb on - strand, within ABZR87_RS22415 at 1388.490 kb on - strand, within ABZR87_RS22415 at 1388.490 kb on - strand, within ABZR87_RS22415 at 1388.772 kb on + strand at 1388.773 kb on - strand at 1388.773 kb on - strand at 1388.773 kb on - strand at 1388.773 kb on - strand at 1388.773 kb on - strand at 1388.831 kb on - strand at 1388.833 kb on + strand at 1388.868 kb on + strand at 1388.868 kb on + strand at 1388.868 kb on + strand at 1388.868 kb on + strand at 1388.868 kb on + strand at 1388.868 kb on + strand at 1388.868 kb on + strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1388.869 kb on - strand at 1389.138 kb on + strand, within ABZR87_RS22420 at 1389.138 kb on + strand, within ABZR87_RS22420 at 1389.139 kb on - strand, within ABZR87_RS22420 at 1389.139 kb on - strand, within ABZR87_RS22420 at 1389.618 kb on + strand, within ABZR87_RS22425 at 1389.619 kb on - strand, within ABZR87_RS22425 at 1389.677 kb on + strand, within ABZR87_RS22425 at 1389.677 kb on + strand, within ABZR87_RS22425 at 1389.677 kb on + strand, within ABZR87_RS22425 at 1389.677 kb on + strand, within ABZR87_RS22425 at 1389.677 kb on + strand, within ABZR87_RS22425 at 1389.677 kb on + strand, within ABZR87_RS22425 at 1389.677 kb on + strand, within ABZR87_RS22425 at 1389.677 kb on + strand, within ABZR87_RS22425 at 1389.678 kb on - strand, within ABZR87_RS22425 at 1389.678 kb on - strand, within ABZR87_RS22425 at 1389.678 kb on - strand, within ABZR87_RS22425 at 1389.678 kb on - strand, within ABZR87_RS22425 at 1389.678 kb on - strand, within ABZR87_RS22425 at 1389.678 kb on - strand, within ABZR87_RS22425 at 1389.678 kb on - strand, within ABZR87_RS22425 at 1389.678 kb on - strand, within ABZR87_RS22425 at 1389.723 kb on + strand, within ABZR87_RS22425 at 1389.724 kb on - strand, within ABZR87_RS22425 at 1389.724 kb on - strand, within ABZR87_RS22425 at 1389.724 kb on - strand, within ABZR87_RS22425 at 1389.724 kb on - strand, within ABZR87_RS22425 at 1389.724 kb on - strand, within ABZR87_RS22425 at 1389.789 kb on + strand, within ABZR87_RS22425 at 1389.790 kb on - strand, within ABZR87_RS22425 at 1389.790 kb on - strand, within ABZR87_RS22425 at 1389.790 kb on - strand, within ABZR87_RS22425 at 1389.790 kb on - strand, within ABZR87_RS22425 at 1389.790 kb on - strand, within ABZR87_RS22425 at 1389.790 kb on - strand, within ABZR87_RS22425 at 1390.029 kb on + strand, within ABZR87_RS22425 at 1390.029 kb on + strand, within ABZR87_RS22425 at 1390.029 kb on + strand, within ABZR87_RS22425 at 1390.029 kb on + strand, within ABZR87_RS22425 at 1390.029 kb on + strand, within ABZR87_RS22425 at 1390.030 kb on - strand, within ABZR87_RS22425 at 1390.030 kb on - strand, within ABZR87_RS22425 at 1390.030 kb on - strand, within ABZR87_RS22425 at 1390.030 kb on - strand, within ABZR87_RS22425 at 1390.030 kb on - strand, within ABZR87_RS22425 at 1390.080 kb on + strand, within ABZR87_RS22425 at 1390.081 kb on - strand, within ABZR87_RS22425 at 1390.081 kb on - strand, within ABZR87_RS22425 at 1390.081 kb on - strand, within ABZR87_RS22425 at 1390.122 kb on + strand, within ABZR87_RS22425 at 1390.123 kb on - strand, within ABZR87_RS22425 at 1390.123 kb on - strand, within ABZR87_RS22425 at 1390.155 kb on + strand, within ABZR87_RS22425 at 1390.156 kb on - strand, within ABZR87_RS22425 at 1390.156 kb on - strand, within ABZR87_RS22425 at 1390.156 kb on - strand, within ABZR87_RS22425 at 1390.156 kb on - strand, within ABZR87_RS22425 at 1390.156 kb on - strand, within ABZR87_RS22425
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,387,959 + ABZR87_RS22410 0.68 -0.5 1,387,960 - ABZR87_RS22410 0.68 +0.4 1,387,960 - ABZR87_RS22410 0.68 -1.5 1,388,148 + ABZR87_RS22410 0.89 +1.3 1,388,148 + ABZR87_RS22410 0.89 -0.3 1,388,148 + ABZR87_RS22410 0.89 +1.0 1,388,148 + ABZR87_RS22410 0.89 -0.6 1,388,148 + ABZR87_RS22410 0.89 +0.8 1,388,148 + ABZR87_RS22410 0.89 -0.1 1,388,149 - ABZR87_RS22410 0.89 -0.4 1,388,149 - ABZR87_RS22410 0.89 -0.6 1,388,149 - ABZR87_RS22410 0.89 +0.0 1,388,149 - ABZR87_RS22410 0.89 -0.2 1,388,149 - ABZR87_RS22410 0.89 -1.6 1,388,149 - ABZR87_RS22410 0.89 -3.0 1,388,149 - ABZR87_RS22410 0.89 +0.5 1,388,149 - ABZR87_RS22410 0.89 +0.6 1,388,149 - ABZR87_RS22410 0.89 +0.4 1,388,299 + +0.2 1,388,299 + -0.2 1,388,299 + -0.3 1,388,299 + +0.1 1,388,300 - -0.8 1,388,300 - -2.1 1,388,300 - -0.2 1,388,490 - ABZR87_RS22415 0.32 -1.1 1,388,490 - ABZR87_RS22415 0.32 +1.6 1,388,490 - ABZR87_RS22415 0.32 -1.0 1,388,772 + -0.1 1,388,773 - -0.6 1,388,773 - +1.0 1,388,773 - -0.2 1,388,773 - -0.6 1,388,773 - -0.7 1,388,831 - +0.3 1,388,833 + +0.2 1,388,868 + -0.8 1,388,868 + +0.4 1,388,868 + +0.7 1,388,868 + +0.4 1,388,868 + +2.0 1,388,868 + +1.0 1,388,868 + +0.7 1,388,869 - +1.0 1,388,869 - -0.0 1,388,869 - -0.7 1,388,869 - +0.3 1,388,869 - -2.0 1,388,869 - +0.2 1,388,869 - -0.0 1,388,869 - +0.2 1,388,869 - +0.8 1,388,869 - -1.0 1,388,869 - -0.3 1,388,869 - +0.2 1,389,138 + ABZR87_RS22420 0.49 +1.0 1,389,138 + ABZR87_RS22420 0.49 -0.8 1,389,139 - ABZR87_RS22420 0.49 -0.3 1,389,139 - ABZR87_RS22420 0.49 +0.3 1,389,618 + ABZR87_RS22425 0.19 +0.6 1,389,619 - ABZR87_RS22425 0.20 -0.6 1,389,677 + ABZR87_RS22425 0.25 -0.4 1,389,677 + ABZR87_RS22425 0.25 -1.2 1,389,677 + ABZR87_RS22425 0.25 +1.3 1,389,677 + ABZR87_RS22425 0.25 -0.0 1,389,677 + ABZR87_RS22425 0.25 -0.6 1,389,677 + ABZR87_RS22425 0.25 -1.1 1,389,677 + ABZR87_RS22425 0.25 +0.1 1,389,677 + ABZR87_RS22425 0.25 -1.6 1,389,678 - ABZR87_RS22425 0.25 +1.2 1,389,678 - ABZR87_RS22425 0.25 +0.0 1,389,678 - ABZR87_RS22425 0.25 +0.0 1,389,678 - ABZR87_RS22425 0.25 -0.6 1,389,678 - ABZR87_RS22425 0.25 -0.2 1,389,678 - ABZR87_RS22425 0.25 +0.1 1,389,678 - ABZR87_RS22425 0.25 -0.4 1,389,678 - ABZR87_RS22425 0.25 +0.0 1,389,723 + ABZR87_RS22425 0.30 -0.5 1,389,724 - ABZR87_RS22425 0.30 +0.9 1,389,724 - ABZR87_RS22425 0.30 -0.5 1,389,724 - ABZR87_RS22425 0.30 -1.1 1,389,724 - ABZR87_RS22425 0.30 -0.1 1,389,724 - ABZR87_RS22425 0.30 +0.2 1,389,789 + ABZR87_RS22425 0.36 +0.7 1,389,790 - ABZR87_RS22425 0.37 +0.6 1,389,790 - ABZR87_RS22425 0.37 -0.1 1,389,790 - ABZR87_RS22425 0.37 +0.9 1,389,790 - ABZR87_RS22425 0.37 -0.3 1,389,790 - ABZR87_RS22425 0.37 +0.5 1,389,790 - ABZR87_RS22425 0.37 -0.0 1,390,029 + ABZR87_RS22425 0.60 -0.5 1,390,029 + ABZR87_RS22425 0.60 +1.2 1,390,029 + ABZR87_RS22425 0.60 +0.5 1,390,029 + ABZR87_RS22425 0.60 +0.7 1,390,029 + ABZR87_RS22425 0.60 +1.0 1,390,030 - ABZR87_RS22425 0.60 -1.3 1,390,030 - ABZR87_RS22425 0.60 -0.7 1,390,030 - ABZR87_RS22425 0.60 +0.5 1,390,030 - ABZR87_RS22425 0.60 -0.3 1,390,030 - ABZR87_RS22425 0.60 +0.1 1,390,080 + ABZR87_RS22425 0.65 +0.3 1,390,081 - ABZR87_RS22425 0.65 +0.6 1,390,081 - ABZR87_RS22425 0.65 +0.0 1,390,081 - ABZR87_RS22425 0.65 +0.9 1,390,122 + ABZR87_RS22425 0.70 -0.5 1,390,123 - ABZR87_RS22425 0.70 +0.3 1,390,123 - ABZR87_RS22425 0.70 +0.4 1,390,155 + ABZR87_RS22425 0.73 -0.2 1,390,156 - ABZR87_RS22425 0.73 -1.5 1,390,156 - ABZR87_RS22425 0.73 +0.7 1,390,156 - ABZR87_RS22425 0.73 -0.9 1,390,156 - ABZR87_RS22425 0.73 +0.5 1,390,156 - ABZR87_RS22425 0.73 -0.2
Or see this region's nucleotide sequence