Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21805 and ABZR87_RS21810 are separated by 49 nucleotides ABZR87_RS21810 and ABZR87_RS21815 overlap by 4 nucleotides ABZR87_RS21815 and ABZR87_RS21820 overlap by 4 nucleotides
ABZR87_RS21805: ABZR87_RS21805 - sugar kinase, at 1,276,404 to 1,277,336
_RS21805
ABZR87_RS21810: ABZR87_RS21810 - enoyl-CoA hydratase, at 1,277,386 to 1,278,174
_RS21810
ABZR87_RS21815: ABZR87_RS21815 - MarR family winged helix-turn-helix transcriptional regulator, at 1,278,171 to 1,278,605
_RS21815
ABZR87_RS21820: ABZR87_RS21820 - alpha/beta hydrolase, at 1,278,602 to 1,279,489
_RS21820
Position (kb)
1278
1279 Strain fitness (log2 ratio)
-1
0
1 at 1277.265 kb on + strand at 1277.265 kb on + strand at 1277.266 kb on - strand at 1277.612 kb on + strand, within ABZR87_RS21810 at 1277.613 kb on - strand, within ABZR87_RS21810 at 1278.081 kb on - strand, within ABZR87_RS21810 at 1278.249 kb on - strand, within ABZR87_RS21815 at 1278.577 kb on + strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.832 kb on - strand, within ABZR87_RS21820 at 1278.901 kb on - strand, within ABZR87_RS21820 at 1278.987 kb on + strand, within ABZR87_RS21820 at 1278.987 kb on + strand, within ABZR87_RS21820 at 1278.987 kb on + strand, within ABZR87_RS21820 at 1278.988 kb on - strand, within ABZR87_RS21820 at 1279.303 kb on - strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.309 kb on - strand, within ABZR87_RS21820 at 1279.309 kb on - strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.360 kb on - strand, within ABZR87_RS21820 at 1279.360 kb on - strand, within ABZR87_RS21820 at 1279.360 kb on - strand, within ABZR87_RS21820 at 1279.360 kb on - strand, within ABZR87_RS21820 at 1279.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,277,265 + +0.8 1,277,265 + -0.2 1,277,266 - -0.7 1,277,612 + ABZR87_RS21810 0.29 +1.7 1,277,613 - ABZR87_RS21810 0.29 -0.2 1,278,081 - ABZR87_RS21810 0.88 -0.1 1,278,249 - ABZR87_RS21815 0.18 -1.4 1,278,577 + -1.2 1,278,578 - -0.2 1,278,578 - -0.3 1,278,578 - -0.2 1,278,578 - -0.4 1,278,578 - +0.7 1,278,578 - +0.0 1,278,832 - ABZR87_RS21820 0.26 -1.0 1,278,901 - ABZR87_RS21820 0.34 +0.4 1,278,987 + ABZR87_RS21820 0.43 -0.0 1,278,987 + ABZR87_RS21820 0.43 -0.0 1,278,987 + ABZR87_RS21820 0.43 +0.1 1,278,988 - ABZR87_RS21820 0.43 +0.2 1,279,303 - ABZR87_RS21820 0.79 -0.3 1,279,308 + ABZR87_RS21820 0.80 -0.7 1,279,308 + ABZR87_RS21820 0.80 -0.4 1,279,308 + ABZR87_RS21820 0.80 -0.6 1,279,308 + ABZR87_RS21820 0.80 +0.5 1,279,308 + ABZR87_RS21820 0.80 -0.3 1,279,309 - ABZR87_RS21820 0.80 +0.9 1,279,309 - ABZR87_RS21820 0.80 +0.5 1,279,359 + ABZR87_RS21820 0.85 -0.0 1,279,359 + ABZR87_RS21820 0.85 +1.3 1,279,359 + ABZR87_RS21820 0.85 +0.7 1,279,359 + ABZR87_RS21820 0.85 +1.1 1,279,359 + ABZR87_RS21820 0.85 -0.2 1,279,359 + ABZR87_RS21820 0.85 +0.2 1,279,359 + ABZR87_RS21820 0.85 +0.3 1,279,360 - ABZR87_RS21820 0.85 +0.5 1,279,360 - ABZR87_RS21820 0.85 +0.1 1,279,360 - ABZR87_RS21820 0.85 +0.3 1,279,360 - ABZR87_RS21820 0.85 -0.5 1,279,577 + -0.9
Or see this region's nucleotide sequence