Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20425 and ABZR87_RS20430 overlap by 4 nucleotides ABZR87_RS20430 and ABZR87_RS20435 overlap by 4 nucleotides
ABZR87_RS20425: ABZR87_RS20425 - EAL domain-containing protein, at 969,247 to 971,259
_RS20425
ABZR87_RS20430: ABZR87_RS20430 - YfiR family protein, at 971,256 to 971,828
_RS20430
ABZR87_RS20435: ABZR87_RS20435 - TonB-dependent receptor, at 971,825 to 973,795
_RS20435
Position (kb) 971
972 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 970.277 kb on + strand, within ABZR87_RS20425 at 970.277 kb on + strand, within ABZR87_RS20425 at 970.671 kb on - strand, within ABZR87_RS20425 at 970.671 kb on - strand, within ABZR87_RS20425 at 970.775 kb on + strand, within ABZR87_RS20425 at 970.793 kb on + strand, within ABZR87_RS20425 at 970.793 kb on + strand, within ABZR87_RS20425 at 970.793 kb on + strand, within ABZR87_RS20425 at 970.888 kb on + strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.952 kb on + strand, within ABZR87_RS20425 at 970.953 kb on - strand, within ABZR87_RS20425 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.838 kb on + strand at 971.838 kb on + strand at 971.838 kb on + strand at 971.839 kb on - strand at 971.937 kb on + strand at 971.938 kb on - strand at 971.938 kb on - strand at 972.006 kb on + strand at 972.048 kb on + strand, within ABZR87_RS20435 at 972.048 kb on + strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.178 kb on - strand, within ABZR87_RS20435 at 972.219 kb on + strand, within ABZR87_RS20435 at 972.385 kb on - strand, within ABZR87_RS20435 at 972.385 kb on - strand, within ABZR87_RS20435 at 972.451 kb on - strand, within ABZR87_RS20435 at 972.451 kb on - strand, within ABZR87_RS20435 at 972.451 kb on - strand, within ABZR87_RS20435 at 972.492 kb on + strand, within ABZR87_RS20435 at 972.554 kb on + strand, within ABZR87_RS20435 at 972.554 kb on + strand, within ABZR87_RS20435 at 972.555 kb on - strand, within ABZR87_RS20435 at 972.555 kb on - strand, within ABZR87_RS20435 at 972.582 kb on + strand, within ABZR87_RS20435 at 972.639 kb on + strand, within ABZR87_RS20435 at 972.640 kb on - strand, within ABZR87_RS20435 at 972.678 kb on + strand, within ABZR87_RS20435 at 972.688 kb on - strand, within ABZR87_RS20435 at 972.697 kb on + strand, within ABZR87_RS20435 at 972.724 kb on - strand, within ABZR87_RS20435 at 972.724 kb on - strand, within ABZR87_RS20435 at 972.802 kb on - strand, within ABZR87_RS20435 at 972.802 kb on - strand, within ABZR87_RS20435
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 970,277 + ABZR87_RS20425 0.51 +0.1 970,277 + ABZR87_RS20425 0.51 +1.8 970,671 - ABZR87_RS20425 0.71 -1.6 970,671 - ABZR87_RS20425 0.71 +0.8 970,775 + ABZR87_RS20425 0.76 +1.8 970,793 + ABZR87_RS20425 0.77 +0.6 970,793 + ABZR87_RS20425 0.77 +1.3 970,793 + ABZR87_RS20425 0.77 +1.9 970,888 + ABZR87_RS20425 0.82 +2.0 970,889 - ABZR87_RS20425 0.82 +1.1 970,889 - ABZR87_RS20425 0.82 -2.1 970,952 + ABZR87_RS20425 0.85 +0.6 970,953 - ABZR87_RS20425 0.85 -0.0 971,671 + ABZR87_RS20430 0.72 +0.0 971,671 + ABZR87_RS20430 0.72 +1.4 971,671 + ABZR87_RS20430 0.72 +0.1 971,671 + ABZR87_RS20430 0.72 +0.3 971,838 + -0.0 971,838 + +0.6 971,838 + +0.5 971,839 - +0.4 971,937 + +1.0 971,938 - +2.0 971,938 - +1.4 972,006 + -0.2 972,048 + ABZR87_RS20435 0.11 +1.0 972,048 + ABZR87_RS20435 0.11 +0.5 972,049 - ABZR87_RS20435 0.11 +1.5 972,049 - ABZR87_RS20435 0.11 +0.6 972,177 + ABZR87_RS20435 0.18 +0.7 972,177 + ABZR87_RS20435 0.18 +0.9 972,177 + ABZR87_RS20435 0.18 -0.8 972,178 - ABZR87_RS20435 0.18 +0.8 972,219 + ABZR87_RS20435 0.20 -0.1 972,385 - ABZR87_RS20435 0.28 +1.9 972,385 - ABZR87_RS20435 0.28 +1.0 972,451 - ABZR87_RS20435 0.32 +1.8 972,451 - ABZR87_RS20435 0.32 +0.7 972,451 - ABZR87_RS20435 0.32 +0.5 972,492 + ABZR87_RS20435 0.34 -0.1 972,554 + ABZR87_RS20435 0.37 +1.6 972,554 + ABZR87_RS20435 0.37 +0.3 972,555 - ABZR87_RS20435 0.37 +1.7 972,555 - ABZR87_RS20435 0.37 +1.1 972,582 + ABZR87_RS20435 0.38 +0.1 972,639 + ABZR87_RS20435 0.41 +0.5 972,640 - ABZR87_RS20435 0.41 +1.3 972,678 + ABZR87_RS20435 0.43 +1.1 972,688 - ABZR87_RS20435 0.44 +1.2 972,697 + ABZR87_RS20435 0.44 -1.6 972,724 - ABZR87_RS20435 0.46 +3.3 972,724 - ABZR87_RS20435 0.46 +1.8 972,802 - ABZR87_RS20435 0.50 +0.5 972,802 - ABZR87_RS20435 0.50 +2.0
Or see this region's nucleotide sequence