Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20410 and ABZR87_RS20415 are separated by 63 nucleotides ABZR87_RS20415 and ABZR87_RS20420 are separated by 2 nucleotides ABZR87_RS20420 and ABZR87_RS20425 are separated by 68 nucleotides ABZR87_RS20425 and ABZR87_RS20430 overlap by 4 nucleotides ABZR87_RS20430 and ABZR87_RS20435 overlap by 4 nucleotides
ABZR87_RS20410: ABZR87_RS20410 - EamA family transporter, at 967,521 to 968,408
_RS20410
ABZR87_RS20415: ABZR87_RS20415 - type II TA system antitoxin MqsA family protein, at 968,472 to 968,873
_RS20415
ABZR87_RS20420: ABZR87_RS20420 - type II toxin-antitoxin system MqsR family toxin, at 968,876 to 969,178
_RS20420
ABZR87_RS20425: ABZR87_RS20425 - EAL domain-containing protein, at 969,247 to 971,259
_RS20425
ABZR87_RS20430: ABZR87_RS20430 - YfiR family protein, at 971,256 to 971,828
_RS20430
ABZR87_RS20435: ABZR87_RS20435 - TonB-dependent receptor, at 971,825 to 973,795
_RS20435
Position (kb) 969
970
971
972 Strain fitness (log2 ratio) -2
-1
0
1
2 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.251 kb on - strand, within ABZR87_RS20410 at 968.251 kb on - strand, within ABZR87_RS20410 at 968.251 kb on - strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.569 kb on + strand, within ABZR87_RS20415 at 968.570 kb on - strand, within ABZR87_RS20415 at 968.570 kb on - strand, within ABZR87_RS20415 at 968.657 kb on - strand, within ABZR87_RS20415 at 968.671 kb on + strand, within ABZR87_RS20415 at 968.672 kb on - strand, within ABZR87_RS20415 at 968.809 kb on + strand, within ABZR87_RS20415 at 968.810 kb on - strand, within ABZR87_RS20415 at 968.810 kb on - strand, within ABZR87_RS20415 at 968.815 kb on + strand, within ABZR87_RS20415 at 968.816 kb on - strand, within ABZR87_RS20415 at 968.816 kb on - strand, within ABZR87_RS20415 at 968.961 kb on + strand, within ABZR87_RS20420 at 968.961 kb on + strand, within ABZR87_RS20420 at 968.961 kb on + strand, within ABZR87_RS20420 at 968.962 kb on - strand, within ABZR87_RS20420 at 968.962 kb on - strand, within ABZR87_RS20420 at 969.009 kb on + strand, within ABZR87_RS20420 at 969.009 kb on + strand, within ABZR87_RS20420 at 969.010 kb on - strand, within ABZR87_RS20420 at 969.010 kb on - strand, within ABZR87_RS20420 at 969.065 kb on - strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.091 kb on - strand, within ABZR87_RS20420 at 969.091 kb on - strand, within ABZR87_RS20420 at 969.091 kb on - strand, within ABZR87_RS20420 at 969.110 kb on + strand, within ABZR87_RS20420 at 969.164 kb on - strand at 969.164 kb on - strand at 969.202 kb on + strand at 969.205 kb on - strand at 969.211 kb on + strand at 969.211 kb on + strand at 969.211 kb on + strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.248 kb on + strand at 969.249 kb on - strand at 969.390 kb on - strand at 969.587 kb on + strand, within ABZR87_RS20425 at 969.588 kb on - strand, within ABZR87_RS20425 at 969.602 kb on + strand, within ABZR87_RS20425 at 969.993 kb on - strand, within ABZR87_RS20425 at 970.058 kb on + strand, within ABZR87_RS20425 at 970.059 kb on - strand, within ABZR87_RS20425 at 970.108 kb on + strand, within ABZR87_RS20425 at 970.150 kb on - strand, within ABZR87_RS20425 at 970.190 kb on + strand, within ABZR87_RS20425 at 970.190 kb on + strand, within ABZR87_RS20425 at 970.190 kb on + strand, within ABZR87_RS20425 at 970.191 kb on - strand, within ABZR87_RS20425 at 970.191 kb on - strand, within ABZR87_RS20425 at 970.191 kb on - strand, within ABZR87_RS20425 at 970.191 kb on - strand, within ABZR87_RS20425 at 970.277 kb on + strand, within ABZR87_RS20425 at 970.277 kb on + strand, within ABZR87_RS20425 at 970.671 kb on - strand, within ABZR87_RS20425 at 970.671 kb on - strand, within ABZR87_RS20425 at 970.775 kb on + strand, within ABZR87_RS20425 at 970.793 kb on + strand, within ABZR87_RS20425 at 970.793 kb on + strand, within ABZR87_RS20425 at 970.793 kb on + strand, within ABZR87_RS20425 at 970.888 kb on + strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.952 kb on + strand, within ABZR87_RS20425 at 970.953 kb on - strand, within ABZR87_RS20425 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.838 kb on + strand at 971.838 kb on + strand at 971.838 kb on + strand at 971.839 kb on - strand at 971.937 kb on + strand at 971.938 kb on - strand at 971.938 kb on - strand at 972.006 kb on + strand at 972.048 kb on + strand, within ABZR87_RS20435 at 972.048 kb on + strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.178 kb on - strand, within ABZR87_RS20435 at 972.219 kb on + strand, within ABZR87_RS20435
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 968,250 + ABZR87_RS20410 0.82 +0.7 968,250 + ABZR87_RS20410 0.82 +1.6 968,250 + ABZR87_RS20410 0.82 +0.2 968,250 + ABZR87_RS20410 0.82 -0.9 968,250 + ABZR87_RS20410 0.82 -0.9 968,250 + ABZR87_RS20410 0.82 -0.4 968,250 + ABZR87_RS20410 0.82 -0.0 968,251 - ABZR87_RS20410 0.82 -0.9 968,251 - ABZR87_RS20410 0.82 +0.2 968,251 - ABZR87_RS20410 0.82 -0.3 968,256 + ABZR87_RS20410 0.83 -0.4 968,256 + ABZR87_RS20410 0.83 -0.2 968,256 + ABZR87_RS20410 0.83 -0.2 968,256 + ABZR87_RS20410 0.83 -1.5 968,257 - ABZR87_RS20410 0.83 -0.4 968,257 - ABZR87_RS20410 0.83 +1.6 968,257 - ABZR87_RS20410 0.83 +0.8 968,257 - ABZR87_RS20410 0.83 -0.9 968,257 - ABZR87_RS20410 0.83 -0.4 968,257 - ABZR87_RS20410 0.83 +0.1 968,257 - ABZR87_RS20410 0.83 -1.9 968,569 + ABZR87_RS20415 0.24 -2.1 968,570 - ABZR87_RS20415 0.24 -1.5 968,570 - ABZR87_RS20415 0.24 -0.1 968,657 - ABZR87_RS20415 0.46 -0.9 968,671 + ABZR87_RS20415 0.50 -0.4 968,672 - ABZR87_RS20415 0.50 -0.9 968,809 + ABZR87_RS20415 0.84 +0.6 968,810 - ABZR87_RS20415 0.84 +0.2 968,810 - ABZR87_RS20415 0.84 -0.3 968,815 + ABZR87_RS20415 0.85 +2.0 968,816 - ABZR87_RS20415 0.86 -0.6 968,816 - ABZR87_RS20415 0.86 +0.8 968,961 + ABZR87_RS20420 0.28 -2.4 968,961 + ABZR87_RS20420 0.28 -1.8 968,961 + ABZR87_RS20420 0.28 +0.4 968,962 - ABZR87_RS20420 0.28 -0.3 968,962 - ABZR87_RS20420 0.28 +0.4 969,009 + ABZR87_RS20420 0.44 -0.1 969,009 + ABZR87_RS20420 0.44 -0.4 969,010 - ABZR87_RS20420 0.44 -0.2 969,010 - ABZR87_RS20420 0.44 -0.4 969,065 - ABZR87_RS20420 0.62 -0.1 969,090 + ABZR87_RS20420 0.71 +0.1 969,090 + ABZR87_RS20420 0.71 +0.7 969,090 + ABZR87_RS20420 0.71 +0.1 969,090 + ABZR87_RS20420 0.71 -1.0 969,090 + ABZR87_RS20420 0.71 -0.7 969,091 - ABZR87_RS20420 0.71 +0.7 969,091 - ABZR87_RS20420 0.71 +1.9 969,091 - ABZR87_RS20420 0.71 +0.0 969,110 + ABZR87_RS20420 0.77 +0.0 969,164 - +1.2 969,164 - +0.4 969,202 + +0.6 969,205 - +0.3 969,211 + +0.3 969,211 + -0.0 969,211 + +0.2 969,212 - +0.1 969,212 - -0.3 969,212 - -0.3 969,212 - -1.2 969,212 - -0.9 969,248 + -0.2 969,249 - +0.4 969,390 - +0.8 969,587 + ABZR87_RS20425 0.17 +0.5 969,588 - ABZR87_RS20425 0.17 -0.1 969,602 + ABZR87_RS20425 0.18 -1.4 969,993 - ABZR87_RS20425 0.37 +1.4 970,058 + ABZR87_RS20425 0.40 +0.6 970,059 - ABZR87_RS20425 0.40 -0.9 970,108 + ABZR87_RS20425 0.43 +0.2 970,150 - ABZR87_RS20425 0.45 +0.1 970,190 + ABZR87_RS20425 0.47 +1.1 970,190 + ABZR87_RS20425 0.47 +0.1 970,190 + ABZR87_RS20425 0.47 +0.0 970,191 - ABZR87_RS20425 0.47 +0.8 970,191 - ABZR87_RS20425 0.47 +0.0 970,191 - ABZR87_RS20425 0.47 -0.0 970,191 - ABZR87_RS20425 0.47 +1.0 970,277 + ABZR87_RS20425 0.51 +0.1 970,277 + ABZR87_RS20425 0.51 +1.8 970,671 - ABZR87_RS20425 0.71 -1.6 970,671 - ABZR87_RS20425 0.71 +0.8 970,775 + ABZR87_RS20425 0.76 +1.8 970,793 + ABZR87_RS20425 0.77 +0.6 970,793 + ABZR87_RS20425 0.77 +1.3 970,793 + ABZR87_RS20425 0.77 +1.9 970,888 + ABZR87_RS20425 0.82 +2.0 970,889 - ABZR87_RS20425 0.82 +1.1 970,889 - ABZR87_RS20425 0.82 -2.1 970,952 + ABZR87_RS20425 0.85 +0.6 970,953 - ABZR87_RS20425 0.85 -0.0 971,671 + ABZR87_RS20430 0.72 +0.0 971,671 + ABZR87_RS20430 0.72 +1.4 971,671 + ABZR87_RS20430 0.72 +0.1 971,671 + ABZR87_RS20430 0.72 +0.3 971,838 + -0.0 971,838 + +0.6 971,838 + +0.5 971,839 - +0.4 971,937 + +1.0 971,938 - +2.0 971,938 - +1.4 972,006 + -0.2 972,048 + ABZR87_RS20435 0.11 +1.0 972,048 + ABZR87_RS20435 0.11 +0.5 972,049 - ABZR87_RS20435 0.11 +1.5 972,049 - ABZR87_RS20435 0.11 +0.6 972,177 + ABZR87_RS20435 0.18 +0.7 972,177 + ABZR87_RS20435 0.18 +0.9 972,177 + ABZR87_RS20435 0.18 -0.8 972,178 - ABZR87_RS20435 0.18 +0.8 972,219 + ABZR87_RS20435 0.20 -0.1
Or see this region's nucleotide sequence