Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19965 and ABZR87_RS19970 are separated by 299 nucleotides ABZR87_RS19970 and ABZR87_RS19975 are separated by 37 nucleotides
ABZR87_RS19965: ABZR87_RS19965 - efflux RND transporter periplasmic adaptor subunit, at 857,933 to 859,018
_RS19965
ABZR87_RS19970: ABZR87_RS19970 - hypothetical protein, at 859,318 to 859,818
_RS19970
ABZR87_RS19975: ABZR87_RS19975 - thymidine phosphorylase family protein, at 859,856 to 861,403
_RS19975
Position (kb) 859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 858.342 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.345 kb on - strand, within ABZR87_RS19965 at 858.346 kb on + strand, within ABZR87_RS19965 at 858.346 kb on + strand, within ABZR87_RS19965 at 858.618 kb on + strand, within ABZR87_RS19965 at 858.618 kb on + strand, within ABZR87_RS19965 at 858.619 kb on - strand, within ABZR87_RS19965 at 858.619 kb on - strand, within ABZR87_RS19965 at 858.679 kb on + strand, within ABZR87_RS19965 at 858.679 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 859.075 kb on + strand at 859.089 kb on + strand at 859.089 kb on + strand at 859.089 kb on + strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.312 kb on + strand at 859.744 kb on + strand, within ABZR87_RS19970 at 859.744 kb on + strand, within ABZR87_RS19970 at 859.744 kb on + strand, within ABZR87_RS19970 at 859.799 kb on + strand at 859.800 kb on - strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.906 kb on - strand at 859.917 kb on + strand at 859.917 kb on + strand at 859.917 kb on + strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.955 kb on + strand at 859.955 kb on + strand at 860.274 kb on - strand, within ABZR87_RS19975
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 858,342 + ABZR87_RS19965 0.38 -0.2 858,344 + ABZR87_RS19965 0.38 +1.2 858,344 + ABZR87_RS19965 0.38 +0.5 858,344 + ABZR87_RS19965 0.38 +0.4 858,344 + ABZR87_RS19965 0.38 -0.2 858,345 - ABZR87_RS19965 0.38 +0.7 858,346 + ABZR87_RS19965 0.38 -0.3 858,346 + ABZR87_RS19965 0.38 +1.9 858,618 + ABZR87_RS19965 0.63 +0.3 858,618 + ABZR87_RS19965 0.63 -0.5 858,619 - ABZR87_RS19965 0.63 -0.2 858,619 - ABZR87_RS19965 0.63 +0.6 858,679 + ABZR87_RS19965 0.69 -0.1 858,679 + ABZR87_RS19965 0.69 +1.3 858,807 + ABZR87_RS19965 0.80 -0.2 858,807 + ABZR87_RS19965 0.80 +0.1 858,807 + ABZR87_RS19965 0.80 -1.8 858,807 + ABZR87_RS19965 0.80 -0.0 858,807 + ABZR87_RS19965 0.80 -0.3 858,807 + ABZR87_RS19965 0.80 -1.2 858,807 + ABZR87_RS19965 0.80 +0.7 858,808 - ABZR87_RS19965 0.81 -0.1 858,808 - ABZR87_RS19965 0.81 +0.1 858,808 - ABZR87_RS19965 0.81 -0.1 858,808 - ABZR87_RS19965 0.81 +0.4 858,808 - ABZR87_RS19965 0.81 -0.7 858,808 - ABZR87_RS19965 0.81 -0.7 858,808 - ABZR87_RS19965 0.81 +0.4 858,808 - ABZR87_RS19965 0.81 -0.4 858,808 - ABZR87_RS19965 0.81 -0.2 858,808 - ABZR87_RS19965 0.81 +0.3 859,075 + -0.8 859,089 + +0.1 859,089 + -0.3 859,089 + +0.8 859,090 - -0.2 859,090 - +0.4 859,090 - +0.2 859,090 - -1.0 859,312 + -0.2 859,744 + ABZR87_RS19970 0.85 -0.0 859,744 + ABZR87_RS19970 0.85 -3.1 859,744 + ABZR87_RS19970 0.85 -1.0 859,799 + -0.8 859,800 - -0.6 859,905 + +0.0 859,905 + +0.8 859,905 + +0.1 859,905 + +0.6 859,905 + +0.6 859,905 + -0.8 859,906 - -0.6 859,917 + -0.3 859,917 + -1.3 859,917 + +1.1 859,918 - -0.9 859,918 - -0.2 859,918 - -0.6 859,918 - +0.7 859,955 + -0.1 859,955 + +1.0 860,274 - ABZR87_RS19975 0.27 -0.3
Or see this region's nucleotide sequence