Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19920 and ABZR87_RS19925 overlap by 4 nucleotides ABZR87_RS19925 and ABZR87_RS19930 are separated by 51 nucleotides ABZR87_RS19930 and ABZR87_RS19935 are separated by 126 nucleotides ABZR87_RS19935 and ABZR87_RS19940 are separated by 262 nucleotides
ABZR87_RS19920: ABZR87_RS19920 - hypothetical protein, at 846,367 to 846,948
_RS19920
ABZR87_RS19925: ABZR87_RS19925 - hypothetical protein, at 846,945 to 847,631
_RS19925
ABZR87_RS19930: ABZR87_RS19930 - PAS domain-containing sensor histidine kinase, at 847,683 to 849,251
_RS19930
ABZR87_RS19935: ABZR87_RS19935 - hypothetical protein, at 849,378 to 849,728
_RS19935
ABZR87_RS19940: ABZR87_RS19940 - hypothetical protein, at 849,991 to 850,635
_RS19940
Position (kb) 847
848
849
850 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 846.697 kb on + strand, within ABZR87_RS19920 at 846.698 kb on - strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.909 kb on + strand at 846.909 kb on + strand at 846.909 kb on + strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.925 kb on - strand at 846.972 kb on + strand at 846.972 kb on + strand at 846.973 kb on - strand at 847.266 kb on + strand, within ABZR87_RS19925 at 847.266 kb on + strand, within ABZR87_RS19925 at 847.272 kb on + strand, within ABZR87_RS19925 at 847.272 kb on + strand, within ABZR87_RS19925 at 847.273 kb on - strand, within ABZR87_RS19925 at 847.301 kb on + strand, within ABZR87_RS19925 at 847.302 kb on - strand, within ABZR87_RS19925 at 847.302 kb on - strand, within ABZR87_RS19925 at 847.375 kb on + strand, within ABZR87_RS19925 at 847.375 kb on + strand, within ABZR87_RS19925 at 847.376 kb on - strand, within ABZR87_RS19925 at 847.384 kb on - strand, within ABZR87_RS19925 at 847.394 kb on + strand, within ABZR87_RS19925 at 847.394 kb on + strand, within ABZR87_RS19925 at 847.460 kb on + strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.551 kb on + strand, within ABZR87_RS19925 at 847.552 kb on - strand, within ABZR87_RS19925 at 847.584 kb on + strand at 847.585 kb on - strand at 847.585 kb on - strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.638 kb on + strand at 847.639 kb on - strand at 847.695 kb on + strand at 847.695 kb on + strand at 847.696 kb on - strand at 848.024 kb on + strand, within ABZR87_RS19930 at 848.024 kb on + strand, within ABZR87_RS19930 at 848.080 kb on + strand, within ABZR87_RS19930 at 848.081 kb on - strand, within ABZR87_RS19930 at 848.081 kb on - strand, within ABZR87_RS19930 at 848.680 kb on + strand, within ABZR87_RS19930 at 848.680 kb on + strand, within ABZR87_RS19930 at 848.680 kb on + strand, within ABZR87_RS19930 at 848.681 kb on - strand, within ABZR87_RS19930 at 848.695 kb on + strand, within ABZR87_RS19930 at 848.696 kb on - strand, within ABZR87_RS19930 at 848.696 kb on - strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.755 kb on + strand, within ABZR87_RS19930 at 848.755 kb on + strand, within ABZR87_RS19930 at 848.756 kb on - strand, within ABZR87_RS19930 at 848.851 kb on + strand, within ABZR87_RS19930 at 848.851 kb on + strand, within ABZR87_RS19930 at 848.851 kb on + strand, within ABZR87_RS19930 at 848.852 kb on - strand, within ABZR87_RS19930 at 848.852 kb on - strand, within ABZR87_RS19930 at 848.951 kb on + strand, within ABZR87_RS19930 at 849.167 kb on + strand at 849.168 kb on - strand at 849.206 kb on + strand at 849.206 kb on + strand at 849.206 kb on + strand at 849.206 kb on + strand at 849.207 kb on - strand at 849.207 kb on - strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.228 kb on + strand at 849.228 kb on + strand at 849.229 kb on - strand at 849.232 kb on - strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.326 kb on + strand at 849.327 kb on - strand at 849.511 kb on + strand, within ABZR87_RS19935 at 849.511 kb on + strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.521 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.753 kb on - strand at 849.753 kb on - strand at 849.753 kb on - strand at 849.803 kb on - strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.891 kb on + strand at 849.895 kb on + strand at 849.895 kb on + strand at 849.899 kb on + strand at 849.917 kb on - strand at 849.929 kb on + strand at 849.929 kb on + strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.941 kb on + strand at 849.941 kb on + strand at 850.106 kb on + strand, within ABZR87_RS19940 at 850.117 kb on - strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.156 kb on - strand, within ABZR87_RS19940 at 850.156 kb on - strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.191 kb on - strand, within ABZR87_RS19940 at 850.191 kb on - strand, within ABZR87_RS19940 at 850.229 kb on + strand, within ABZR87_RS19940 at 850.229 kb on + strand, within ABZR87_RS19940 at 850.230 kb on - strand, within ABZR87_RS19940 at 850.230 kb on - strand, within ABZR87_RS19940
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 846,697 + ABZR87_RS19920 0.57 +0.6 846,698 - ABZR87_RS19920 0.57 +1.2 846,785 + ABZR87_RS19920 0.72 -0.1 846,785 + ABZR87_RS19920 0.72 -0.8 846,847 + ABZR87_RS19920 0.82 -0.8 846,847 + ABZR87_RS19920 0.82 -0.7 846,848 - ABZR87_RS19920 0.83 -1.3 846,848 - ABZR87_RS19920 0.83 -1.3 846,848 - ABZR87_RS19920 0.83 +0.3 846,848 - ABZR87_RS19920 0.83 +0.6 846,909 + -1.0 846,909 + +0.3 846,909 + -0.1 846,910 - -0.6 846,910 - +0.2 846,910 - +0.6 846,910 - -0.4 846,913 + -0.3 846,913 + -0.0 846,913 + -1.5 846,913 + -1.2 846,913 + +0.1 846,914 - +0.2 846,914 - -0.1 846,914 - +0.7 846,914 - -0.5 846,925 - +0.5 846,972 + +0.5 846,972 + +0.7 846,973 - -2.0 847,266 + ABZR87_RS19925 0.47 -1.6 847,266 + ABZR87_RS19925 0.47 -2.2 847,272 + ABZR87_RS19925 0.48 -0.9 847,272 + ABZR87_RS19925 0.48 +0.2 847,273 - ABZR87_RS19925 0.48 +1.2 847,301 + ABZR87_RS19925 0.52 -1.0 847,302 - ABZR87_RS19925 0.52 -0.7 847,302 - ABZR87_RS19925 0.52 +0.7 847,375 + ABZR87_RS19925 0.63 -0.6 847,375 + ABZR87_RS19925 0.63 -0.5 847,376 - ABZR87_RS19925 0.63 +0.4 847,384 - ABZR87_RS19925 0.64 +0.0 847,394 + ABZR87_RS19925 0.65 -0.5 847,394 + ABZR87_RS19925 0.65 -1.1 847,460 + ABZR87_RS19925 0.75 -0.7 847,461 - ABZR87_RS19925 0.75 -0.1 847,461 - ABZR87_RS19925 0.75 -0.0 847,461 - ABZR87_RS19925 0.75 -0.9 847,461 - ABZR87_RS19925 0.75 -0.8 847,551 + ABZR87_RS19925 0.88 -1.0 847,552 - ABZR87_RS19925 0.88 +0.2 847,584 + +0.7 847,585 - +0.7 847,585 - +0.1 847,611 + +1.3 847,611 + -0.4 847,611 + -0.3 847,611 + -0.5 847,611 + -0.4 847,611 + +1.3 847,611 + +1.1 847,611 + -0.7 847,611 + +0.8 847,612 - -0.0 847,612 - -1.6 847,612 - -0.4 847,612 - -0.5 847,612 - +1.0 847,612 - +1.2 847,612 - -0.0 847,612 - -1.0 847,612 - -1.7 847,612 - +0.2 847,612 - -0.5 847,612 - +0.9 847,612 - +0.4 847,612 - +0.1 847,638 + -0.2 847,639 - -1.2 847,695 + -0.3 847,695 + +0.2 847,696 - -0.3 848,024 + ABZR87_RS19930 0.22 +0.7 848,024 + ABZR87_RS19930 0.22 -0.2 848,080 + ABZR87_RS19930 0.25 -0.8 848,081 - ABZR87_RS19930 0.25 +0.1 848,081 - ABZR87_RS19930 0.25 +0.2 848,680 + ABZR87_RS19930 0.64 -0.0 848,680 + ABZR87_RS19930 0.64 +0.3 848,680 + ABZR87_RS19930 0.64 -0.2 848,681 - ABZR87_RS19930 0.64 +1.7 848,695 + ABZR87_RS19930 0.64 -1.8 848,696 - ABZR87_RS19930 0.65 -1.9 848,696 - ABZR87_RS19930 0.65 +0.9 848,723 + ABZR87_RS19930 0.66 -0.6 848,723 + ABZR87_RS19930 0.66 -1.0 848,723 + ABZR87_RS19930 0.66 +1.7 848,723 + ABZR87_RS19930 0.66 +0.3 848,724 - ABZR87_RS19930 0.66 -0.9 848,724 - ABZR87_RS19930 0.66 -2.0 848,724 - ABZR87_RS19930 0.66 +0.6 848,724 - ABZR87_RS19930 0.66 -0.4 848,755 + ABZR87_RS19930 0.68 +2.4 848,755 + ABZR87_RS19930 0.68 -0.8 848,756 - ABZR87_RS19930 0.68 +0.3 848,851 + ABZR87_RS19930 0.74 +0.3 848,851 + ABZR87_RS19930 0.74 -0.6 848,851 + ABZR87_RS19930 0.74 +0.6 848,852 - ABZR87_RS19930 0.75 -0.1 848,852 - ABZR87_RS19930 0.75 -1.2 848,951 + ABZR87_RS19930 0.81 +0.6 849,167 + -0.3 849,168 - +1.7 849,206 + -0.2 849,206 + +0.2 849,206 + -1.5 849,206 + +0.5 849,207 - +0.0 849,207 - +1.0 849,208 + -0.1 849,208 + -1.0 849,208 + -0.8 849,208 + -1.8 849,208 + +0.6 849,208 + +0.6 849,208 + -0.0 849,208 + +0.5 849,208 + +0.3 849,209 - +0.4 849,209 - +0.6 849,209 - +0.5 849,209 - -2.2 849,209 - -1.2 849,228 + -0.3 849,228 + +0.0 849,229 - +0.2 849,232 - -1.9 849,297 + -0.9 849,297 + -0.3 849,297 + -1.3 849,297 + +0.4 849,297 + +0.2 849,298 - -2.5 849,298 - -0.7 849,298 - -0.8 849,298 - -0.9 849,298 - -0.8 849,298 - -2.0 849,298 - -0.5 849,326 + -2.3 849,327 - +0.2 849,511 + ABZR87_RS19935 0.38 -1.5 849,511 + ABZR87_RS19935 0.38 -2.0 849,512 - ABZR87_RS19935 0.38 +1.0 849,512 - ABZR87_RS19935 0.38 -1.3 849,512 - ABZR87_RS19935 0.38 -0.9 849,512 - ABZR87_RS19935 0.38 +1.2 849,512 - ABZR87_RS19935 0.38 -0.2 849,521 - ABZR87_RS19935 0.41 -0.6 849,566 - ABZR87_RS19935 0.54 +0.2 849,566 - ABZR87_RS19935 0.54 -0.6 849,566 - ABZR87_RS19935 0.54 +0.1 849,566 - ABZR87_RS19935 0.54 -1.5 849,752 + +0.2 849,752 + -0.3 849,752 + -0.4 849,752 + -0.1 849,752 + -0.2 849,752 + +0.3 849,752 + +0.5 849,752 + -0.3 849,752 + +1.0 849,752 + -0.5 849,752 + +0.2 849,753 - +0.3 849,753 - +0.7 849,753 - -1.3 849,803 - -1.4 849,870 + -0.1 849,870 + +0.0 849,870 + -0.1 849,870 + -0.1 849,871 - +1.0 849,871 - -0.3 849,871 - -0.8 849,871 - -0.6 849,891 + +0.7 849,895 + +0.3 849,895 + +0.2 849,899 + +4.6 849,917 - +0.6 849,929 + -0.5 849,929 + +0.6 849,930 - +1.0 849,930 - +1.5 849,930 - +0.6 849,930 - +0.4 849,941 + +0.8 849,941 + -0.3 850,106 + ABZR87_RS19940 0.18 -1.9 850,117 - ABZR87_RS19940 0.20 +0.5 850,145 + ABZR87_RS19940 0.24 -1.5 850,145 + ABZR87_RS19940 0.24 -1.0 850,145 + ABZR87_RS19940 0.24 -0.1 850,146 - ABZR87_RS19940 0.24 -1.3 850,146 - ABZR87_RS19940 0.24 -0.6 850,146 - ABZR87_RS19940 0.24 +0.6 850,156 - ABZR87_RS19940 0.26 -0.8 850,156 - ABZR87_RS19940 0.26 -0.0 850,157 + ABZR87_RS19940 0.26 -0.1 850,157 + ABZR87_RS19940 0.26 -1.1 850,157 + ABZR87_RS19940 0.26 -0.2 850,157 + ABZR87_RS19940 0.26 -1.2 850,157 + ABZR87_RS19940 0.26 -0.3 850,157 + ABZR87_RS19940 0.26 +0.6 850,157 + ABZR87_RS19940 0.26 -0.3 850,157 + ABZR87_RS19940 0.26 -0.1 850,158 - ABZR87_RS19940 0.26 +1.0 850,158 - ABZR87_RS19940 0.26 -0.2 850,158 - ABZR87_RS19940 0.26 -0.3 850,158 - ABZR87_RS19940 0.26 -0.3 850,158 - ABZR87_RS19940 0.26 +0.6 850,158 - ABZR87_RS19940 0.26 -1.3 850,158 - ABZR87_RS19940 0.26 -1.5 850,191 - ABZR87_RS19940 0.31 -0.9 850,191 - ABZR87_RS19940 0.31 -0.8 850,229 + ABZR87_RS19940 0.37 +0.6 850,229 + ABZR87_RS19940 0.37 +0.6 850,230 - ABZR87_RS19940 0.37 +1.1 850,230 - ABZR87_RS19940 0.37 -2.4
Or see this region's nucleotide sequence