Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19785 and ABZR87_RS19790 are separated by 110 nucleotides ABZR87_RS19790 and ABZR87_RS19795 are separated by 165 nucleotides ABZR87_RS19795 and ABZR87_RS19800 are separated by 80 nucleotides
ABZR87_RS19785: ABZR87_RS19785 - cystathionine beta-lyase, at 810,846 to 812,024
_RS19785
ABZR87_RS19790: ABZR87_RS19790 - Lrp/AsnC family transcriptional regulator, at 812,135 to 812,611
_RS19790
ABZR87_RS19795: ABZR87_RS19795 - gamma-glutamyltransferase, at 812,777 to 814,486
_RS19795
ABZR87_RS19800: ABZR87_RS19800 - VOC family protein, at 814,567 to 815,640
_RS19800
Position (kb) 812
813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 811.793 kb on + strand, within ABZR87_RS19785 at 811.794 kb on - strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.876 kb on + strand, within ABZR87_RS19785 at 811.877 kb on - strand, within ABZR87_RS19785 at 811.877 kb on - strand, within ABZR87_RS19785 at 812.062 kb on - strand at 812.204 kb on + strand, within ABZR87_RS19790 at 812.204 kb on + strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.244 kb on + strand, within ABZR87_RS19790 at 812.244 kb on + strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.383 kb on + strand, within ABZR87_RS19790 at 812.441 kb on + strand, within ABZR87_RS19790 at 812.441 kb on + strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.445 kb on - strand, within ABZR87_RS19790 at 812.445 kb on - strand, within ABZR87_RS19790 at 812.501 kb on + strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.649 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.666 kb on - strand at 812.711 kb on + strand at 812.712 kb on - strand at 812.740 kb on + strand at 812.741 kb on - strand at 812.741 kb on - strand at 812.741 kb on - strand at 812.755 kb on + strand at 812.755 kb on + strand at 812.756 kb on - strand at 812.961 kb on - strand, within ABZR87_RS19795 at 812.961 kb on - strand, within ABZR87_RS19795 at 812.978 kb on + strand, within ABZR87_RS19795 at 812.979 kb on - strand, within ABZR87_RS19795 at 813.095 kb on + strand, within ABZR87_RS19795 at 813.095 kb on + strand, within ABZR87_RS19795 at 813.095 kb on + strand, within ABZR87_RS19795 at 813.096 kb on - strand, within ABZR87_RS19795 at 813.096 kb on - strand, within ABZR87_RS19795 at 813.096 kb on - strand, within ABZR87_RS19795 at 813.185 kb on + strand, within ABZR87_RS19795 at 813.185 kb on + strand, within ABZR87_RS19795 at 813.200 kb on + strand, within ABZR87_RS19795 at 813.200 kb on + strand, within ABZR87_RS19795 at 813.201 kb on - strand, within ABZR87_RS19795 at 813.443 kb on + strand, within ABZR87_RS19795 at 813.443 kb on + strand, within ABZR87_RS19795 at 813.443 kb on + strand, within ABZR87_RS19795 at 813.444 kb on - strand, within ABZR87_RS19795 at 813.444 kb on - strand, within ABZR87_RS19795 at 813.444 kb on - strand, within ABZR87_RS19795 at 813.524 kb on + strand, within ABZR87_RS19795 at 813.524 kb on + strand, within ABZR87_RS19795 at 813.524 kb on + strand, within ABZR87_RS19795 at 813.525 kb on - strand, within ABZR87_RS19795 at 813.525 kb on - strand, within ABZR87_RS19795 at 813.569 kb on + strand, within ABZR87_RS19795 at 813.569 kb on + strand, within ABZR87_RS19795 at 813.570 kb on - strand, within ABZR87_RS19795 at 813.570 kb on - strand, within ABZR87_RS19795 at 813.690 kb on - strand, within ABZR87_RS19795 at 813.716 kb on + strand, within ABZR87_RS19795 at 813.716 kb on + strand, within ABZR87_RS19795 at 813.716 kb on + strand, within ABZR87_RS19795 at 813.717 kb on - strand, within ABZR87_RS19795 at 813.717 kb on - strand, within ABZR87_RS19795 at 813.717 kb on - strand, within ABZR87_RS19795 at 813.717 kb on - strand, within ABZR87_RS19795 at 813.734 kb on + strand, within ABZR87_RS19795 at 813.734 kb on + strand, within ABZR87_RS19795 at 813.735 kb on - strand, within ABZR87_RS19795 at 813.735 kb on - strand, within ABZR87_RS19795 at 813.735 kb on - strand, within ABZR87_RS19795 at 813.791 kb on + strand, within ABZR87_RS19795 at 813.792 kb on - strand, within ABZR87_RS19795 at 813.894 kb on - strand, within ABZR87_RS19795 at 813.911 kb on + strand, within ABZR87_RS19795 at 813.911 kb on + strand, within ABZR87_RS19795 at 813.935 kb on + strand, within ABZR87_RS19795 at 813.935 kb on + strand, within ABZR87_RS19795 at 813.935 kb on + strand, within ABZR87_RS19795 at 814.044 kb on - strand, within ABZR87_RS19795 at 814.215 kb on - strand, within ABZR87_RS19795 at 814.215 kb on - strand, within ABZR87_RS19795 at 814.215 kb on - strand, within ABZR87_RS19795 at 814.296 kb on - strand, within ABZR87_RS19795 at 814.437 kb on - strand at 814.482 kb on - strand at 814.482 kb on - strand at 814.731 kb on - strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.791 kb on - strand, within ABZR87_RS19800 at 814.791 kb on - strand, within ABZR87_RS19800 at 814.793 kb on + strand, within ABZR87_RS19800 at 814.794 kb on - strand, within ABZR87_RS19800 at 814.794 kb on - strand, within ABZR87_RS19800 at 814.952 kb on + strand, within ABZR87_RS19800 at 814.952 kb on + strand, within ABZR87_RS19800 at 814.953 kb on - strand, within ABZR87_RS19800 at 815.064 kb on - strand, within ABZR87_RS19800 at 815.064 kb on - strand, within ABZR87_RS19800 at 815.198 kb on + strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.271 kb on + strand, within ABZR87_RS19800 at 815.367 kb on - strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 811,793 + ABZR87_RS19785 0.80 -0.8 811,794 - ABZR87_RS19785 0.80 -1.7 811,861 + ABZR87_RS19785 0.86 -0.8 811,861 + ABZR87_RS19785 0.86 -0.5 811,861 + ABZR87_RS19785 0.86 -0.6 811,870 + ABZR87_RS19785 0.87 -0.0 811,870 + ABZR87_RS19785 0.87 -0.7 811,870 + ABZR87_RS19785 0.87 +0.7 811,871 - ABZR87_RS19785 0.87 -0.1 811,871 - ABZR87_RS19785 0.87 -0.9 811,871 - ABZR87_RS19785 0.87 +0.3 811,871 - ABZR87_RS19785 0.87 -0.4 811,871 - ABZR87_RS19785 0.87 +0.2 811,874 + ABZR87_RS19785 0.87 -1.2 811,874 + ABZR87_RS19785 0.87 -0.5 811,874 + ABZR87_RS19785 0.87 -3.2 811,874 + ABZR87_RS19785 0.87 +1.3 811,874 + ABZR87_RS19785 0.87 -1.3 811,875 - ABZR87_RS19785 0.87 +0.0 811,875 - ABZR87_RS19785 0.87 -1.3 811,875 - ABZR87_RS19785 0.87 -0.8 811,875 - ABZR87_RS19785 0.87 -1.9 811,875 - ABZR87_RS19785 0.87 -0.9 811,875 - ABZR87_RS19785 0.87 -0.4 811,876 + ABZR87_RS19785 0.87 -1.0 811,877 - ABZR87_RS19785 0.87 -0.3 811,877 - ABZR87_RS19785 0.87 +1.8 812,062 - -0.8 812,204 + ABZR87_RS19790 0.14 -0.2 812,204 + ABZR87_RS19790 0.14 +0.8 812,205 - ABZR87_RS19790 0.15 -0.3 812,205 - ABZR87_RS19790 0.15 +0.1 812,205 - ABZR87_RS19790 0.15 -0.3 812,205 - ABZR87_RS19790 0.15 +2.6 812,244 + ABZR87_RS19790 0.23 -0.7 812,244 + ABZR87_RS19790 0.23 +0.5 812,245 - ABZR87_RS19790 0.23 -0.0 812,245 - ABZR87_RS19790 0.23 -0.1 812,245 - ABZR87_RS19790 0.23 -0.0 812,383 + ABZR87_RS19790 0.52 +2.6 812,441 + ABZR87_RS19790 0.64 -0.6 812,441 + ABZR87_RS19790 0.64 -0.2 812,442 - ABZR87_RS19790 0.64 +1.3 812,442 - ABZR87_RS19790 0.64 +0.6 812,442 - ABZR87_RS19790 0.64 -0.0 812,442 - ABZR87_RS19790 0.64 +0.9 812,444 + ABZR87_RS19790 0.65 -0.5 812,444 + ABZR87_RS19790 0.65 -0.1 812,444 + ABZR87_RS19790 0.65 -0.0 812,444 + ABZR87_RS19790 0.65 +0.2 812,445 - ABZR87_RS19790 0.65 -0.8 812,445 - ABZR87_RS19790 0.65 +0.7 812,501 + ABZR87_RS19790 0.77 -0.2 812,502 - ABZR87_RS19790 0.77 +2.6 812,502 - ABZR87_RS19790 0.77 +0.8 812,502 - ABZR87_RS19790 0.77 -1.9 812,649 + -0.4 812,663 + -0.7 812,663 + +0.5 812,663 + +0.7 812,663 + -0.6 812,664 - -1.7 812,664 - -1.1 812,664 - -0.2 812,664 - -0.6 812,664 - +0.1 812,664 - +0.6 812,664 - +1.1 812,664 - -1.7 812,665 + -1.4 812,665 + +0.6 812,665 + -1.4 812,665 + +0.1 812,666 - -0.5 812,711 + +0.9 812,712 - +0.1 812,740 + -0.3 812,741 - -0.0 812,741 - -0.8 812,741 - -0.1 812,755 + -0.0 812,755 + -0.2 812,756 - -0.8 812,961 - ABZR87_RS19795 0.11 -1.9 812,961 - ABZR87_RS19795 0.11 -0.6 812,978 + ABZR87_RS19795 0.12 -0.4 812,979 - ABZR87_RS19795 0.12 -0.8 813,095 + ABZR87_RS19795 0.19 -0.5 813,095 + ABZR87_RS19795 0.19 +0.2 813,095 + ABZR87_RS19795 0.19 +0.3 813,096 - ABZR87_RS19795 0.19 +0.1 813,096 - ABZR87_RS19795 0.19 -0.7 813,096 - ABZR87_RS19795 0.19 +0.1 813,185 + ABZR87_RS19795 0.24 +0.6 813,185 + ABZR87_RS19795 0.24 +0.6 813,200 + ABZR87_RS19795 0.25 -2.1 813,200 + ABZR87_RS19795 0.25 -1.7 813,201 - ABZR87_RS19795 0.25 -0.1 813,443 + ABZR87_RS19795 0.39 +0.6 813,443 + ABZR87_RS19795 0.39 +1.0 813,443 + ABZR87_RS19795 0.39 -0.1 813,444 - ABZR87_RS19795 0.39 -1.6 813,444 - ABZR87_RS19795 0.39 +1.1 813,444 - ABZR87_RS19795 0.39 +0.2 813,524 + ABZR87_RS19795 0.44 +0.2 813,524 + ABZR87_RS19795 0.44 +0.3 813,524 + ABZR87_RS19795 0.44 -0.1 813,525 - ABZR87_RS19795 0.44 +0.1 813,525 - ABZR87_RS19795 0.44 +0.4 813,569 + ABZR87_RS19795 0.46 -0.4 813,569 + ABZR87_RS19795 0.46 -0.3 813,570 - ABZR87_RS19795 0.46 +0.9 813,570 - ABZR87_RS19795 0.46 -1.5 813,690 - ABZR87_RS19795 0.53 -2.3 813,716 + ABZR87_RS19795 0.55 -0.4 813,716 + ABZR87_RS19795 0.55 +1.2 813,716 + ABZR87_RS19795 0.55 -1.4 813,717 - ABZR87_RS19795 0.55 +0.3 813,717 - ABZR87_RS19795 0.55 +0.1 813,717 - ABZR87_RS19795 0.55 +0.5 813,717 - ABZR87_RS19795 0.55 +1.3 813,734 + ABZR87_RS19795 0.56 +0.6 813,734 + ABZR87_RS19795 0.56 +1.0 813,735 - ABZR87_RS19795 0.56 -0.2 813,735 - ABZR87_RS19795 0.56 +0.4 813,735 - ABZR87_RS19795 0.56 +1.6 813,791 + ABZR87_RS19795 0.59 -0.4 813,792 - ABZR87_RS19795 0.59 -0.2 813,894 - ABZR87_RS19795 0.65 +0.5 813,911 + ABZR87_RS19795 0.66 +0.5 813,911 + ABZR87_RS19795 0.66 +0.8 813,935 + ABZR87_RS19795 0.68 -0.9 813,935 + ABZR87_RS19795 0.68 +0.4 813,935 + ABZR87_RS19795 0.68 +1.0 814,044 - ABZR87_RS19795 0.74 -0.0 814,215 - ABZR87_RS19795 0.84 +0.1 814,215 - ABZR87_RS19795 0.84 -0.5 814,215 - ABZR87_RS19795 0.84 -0.0 814,296 - ABZR87_RS19795 0.89 +0.7 814,437 - +0.3 814,482 - +0.3 814,482 - +1.3 814,731 - ABZR87_RS19800 0.15 +0.3 814,790 + ABZR87_RS19800 0.21 +1.5 814,790 + ABZR87_RS19800 0.21 +0.1 814,790 + ABZR87_RS19800 0.21 +0.7 814,790 + ABZR87_RS19800 0.21 -0.4 814,790 + ABZR87_RS19800 0.21 +0.9 814,790 + ABZR87_RS19800 0.21 +1.1 814,791 - ABZR87_RS19800 0.21 -0.9 814,791 - ABZR87_RS19800 0.21 -0.2 814,793 + ABZR87_RS19800 0.21 -1.3 814,794 - ABZR87_RS19800 0.21 +0.6 814,794 - ABZR87_RS19800 0.21 -0.2 814,952 + ABZR87_RS19800 0.36 -0.3 814,952 + ABZR87_RS19800 0.36 +0.3 814,953 - ABZR87_RS19800 0.36 +0.2 815,064 - ABZR87_RS19800 0.46 +1.6 815,064 - ABZR87_RS19800 0.46 +0.4 815,198 + ABZR87_RS19800 0.59 +0.7 815,199 - ABZR87_RS19800 0.59 +0.3 815,199 - ABZR87_RS19800 0.59 +1.2 815,199 - ABZR87_RS19800 0.59 +0.1 815,199 - ABZR87_RS19800 0.59 -0.9 815,199 - ABZR87_RS19800 0.59 +1.9 815,271 + ABZR87_RS19800 0.66 +1.1 815,367 - ABZR87_RS19800 0.74 +0.8 815,420 + ABZR87_RS19800 0.79 -0.2 815,420 + ABZR87_RS19800 0.79 -0.1 815,420 + ABZR87_RS19800 0.79 -0.5 815,420 + ABZR87_RS19800 0.79 -0.4
Or see this region's nucleotide sequence