Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19790

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19785 and ABZR87_RS19790 are separated by 110 nucleotidesABZR87_RS19790 and ABZR87_RS19795 are separated by 165 nucleotides ABZR87_RS19785: ABZR87_RS19785 - cystathionine beta-lyase, at 810,846 to 812,024 _RS19785 ABZR87_RS19790: ABZR87_RS19790 - Lrp/AsnC family transcriptional regulator, at 812,135 to 812,611 _RS19790 ABZR87_RS19795: ABZR87_RS19795 - gamma-glutamyltransferase, at 812,777 to 814,486 _RS19795 Position (kb) 812 813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 811.411 kb on + strand, within ABZR87_RS19785at 811.411 kb on + strand, within ABZR87_RS19785at 811.412 kb on - strand, within ABZR87_RS19785at 811.412 kb on - strand, within ABZR87_RS19785at 811.412 kb on - strand, within ABZR87_RS19785at 811.465 kb on + strand, within ABZR87_RS19785at 811.465 kb on + strand, within ABZR87_RS19785at 811.466 kb on - strand, within ABZR87_RS19785at 811.466 kb on - strand, within ABZR87_RS19785at 811.466 kb on - strand, within ABZR87_RS19785at 811.480 kb on + strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.595 kb on + strand, within ABZR87_RS19785at 811.596 kb on - strand, within ABZR87_RS19785at 811.643 kb on - strand, within ABZR87_RS19785at 811.756 kb on + strand, within ABZR87_RS19785at 811.756 kb on - strand, within ABZR87_RS19785at 811.793 kb on + strand, within ABZR87_RS19785at 811.794 kb on - strand, within ABZR87_RS19785at 811.861 kb on + strand, within ABZR87_RS19785at 811.861 kb on + strand, within ABZR87_RS19785at 811.861 kb on + strand, within ABZR87_RS19785at 811.870 kb on + strand, within ABZR87_RS19785at 811.870 kb on + strand, within ABZR87_RS19785at 811.870 kb on + strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.876 kb on + strand, within ABZR87_RS19785at 811.877 kb on - strand, within ABZR87_RS19785at 811.877 kb on - strand, within ABZR87_RS19785at 812.062 kb on - strandat 812.204 kb on + strand, within ABZR87_RS19790at 812.204 kb on + strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.244 kb on + strand, within ABZR87_RS19790at 812.244 kb on + strand, within ABZR87_RS19790at 812.245 kb on - strand, within ABZR87_RS19790at 812.245 kb on - strand, within ABZR87_RS19790at 812.245 kb on - strand, within ABZR87_RS19790at 812.383 kb on + strand, within ABZR87_RS19790at 812.441 kb on + strand, within ABZR87_RS19790at 812.441 kb on + strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.445 kb on - strand, within ABZR87_RS19790at 812.445 kb on - strand, within ABZR87_RS19790at 812.501 kb on + strand, within ABZR87_RS19790at 812.502 kb on - strand, within ABZR87_RS19790at 812.502 kb on - strand, within ABZR87_RS19790at 812.502 kb on - strand, within ABZR87_RS19790at 812.649 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.665 kb on + strandat 812.665 kb on + strandat 812.665 kb on + strandat 812.665 kb on + strandat 812.666 kb on - strandat 812.711 kb on + strandat 812.712 kb on - strandat 812.740 kb on + strandat 812.741 kb on - strandat 812.741 kb on - strandat 812.741 kb on - strandat 812.755 kb on + strandat 812.755 kb on + strandat 812.756 kb on - strandat 812.961 kb on - strand, within ABZR87_RS19795at 812.961 kb on - strand, within ABZR87_RS19795at 812.978 kb on + strand, within ABZR87_RS19795at 812.979 kb on - strand, within ABZR87_RS19795at 813.095 kb on + strand, within ABZR87_RS19795at 813.095 kb on + strand, within ABZR87_RS19795at 813.095 kb on + strand, within ABZR87_RS19795at 813.096 kb on - strand, within ABZR87_RS19795at 813.096 kb on - strand, within ABZR87_RS19795at 813.096 kb on - strand, within ABZR87_RS19795at 813.185 kb on + strand, within ABZR87_RS19795at 813.185 kb on + strand, within ABZR87_RS19795at 813.200 kb on + strand, within ABZR87_RS19795at 813.200 kb on + strand, within ABZR87_RS19795at 813.201 kb on - strand, within ABZR87_RS19795at 813.443 kb on + strand, within ABZR87_RS19795at 813.443 kb on + strand, within ABZR87_RS19795at 813.443 kb on + strand, within ABZR87_RS19795at 813.444 kb on - strand, within ABZR87_RS19795at 813.444 kb on - strand, within ABZR87_RS19795at 813.444 kb on - strand, within ABZR87_RS19795at 813.524 kb on + strand, within ABZR87_RS19795at 813.524 kb on + strand, within ABZR87_RS19795at 813.524 kb on + strand, within ABZR87_RS19795at 813.525 kb on - strand, within ABZR87_RS19795at 813.525 kb on - strand, within ABZR87_RS19795at 813.569 kb on + strand, within ABZR87_RS19795at 813.569 kb on + strand, within ABZR87_RS19795at 813.570 kb on - strand, within ABZR87_RS19795at 813.570 kb on - strand, within ABZR87_RS19795

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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811,411 + ABZR87_RS19785 0.48 -1.6
811,411 + ABZR87_RS19785 0.48 -0.5
811,412 - ABZR87_RS19785 0.48 +1.8
811,412 - ABZR87_RS19785 0.48 -0.0
811,412 - ABZR87_RS19785 0.48 -0.1
811,465 + ABZR87_RS19785 0.53 -0.0
811,465 + ABZR87_RS19785 0.53 +0.2
811,466 - ABZR87_RS19785 0.53 -0.3
811,466 - ABZR87_RS19785 0.53 +0.2
811,466 - ABZR87_RS19785 0.53 -0.3
811,480 + ABZR87_RS19785 0.54 -0.1
811,481 - ABZR87_RS19785 0.54 -0.4
811,481 - ABZR87_RS19785 0.54 -0.4
811,481 - ABZR87_RS19785 0.54 -2.0
811,481 - ABZR87_RS19785 0.54 -0.0
811,481 - ABZR87_RS19785 0.54 +0.1
811,481 - ABZR87_RS19785 0.54 -0.9
811,595 + ABZR87_RS19785 0.64 -0.4
811,596 - ABZR87_RS19785 0.64 -1.0
811,643 - ABZR87_RS19785 0.68 -1.4
811,756 + ABZR87_RS19785 0.77 -1.0
811,756 - ABZR87_RS19785 0.77 +1.6
811,793 + ABZR87_RS19785 0.80 -0.8
811,794 - ABZR87_RS19785 0.80 -1.7
811,861 + ABZR87_RS19785 0.86 -0.8
811,861 + ABZR87_RS19785 0.86 -0.5
811,861 + ABZR87_RS19785 0.86 -0.6
811,870 + ABZR87_RS19785 0.87 -0.0
811,870 + ABZR87_RS19785 0.87 -0.7
811,870 + ABZR87_RS19785 0.87 +0.7
811,871 - ABZR87_RS19785 0.87 -0.1
811,871 - ABZR87_RS19785 0.87 -0.9
811,871 - ABZR87_RS19785 0.87 +0.3
811,871 - ABZR87_RS19785 0.87 -0.4
811,871 - ABZR87_RS19785 0.87 +0.2
811,874 + ABZR87_RS19785 0.87 -1.2
811,874 + ABZR87_RS19785 0.87 -0.5
811,874 + ABZR87_RS19785 0.87 -3.2
811,874 + ABZR87_RS19785 0.87 +1.3
811,874 + ABZR87_RS19785 0.87 -1.3
811,875 - ABZR87_RS19785 0.87 +0.0
811,875 - ABZR87_RS19785 0.87 -1.3
811,875 - ABZR87_RS19785 0.87 -0.8
811,875 - ABZR87_RS19785 0.87 -1.9
811,875 - ABZR87_RS19785 0.87 -0.9
811,875 - ABZR87_RS19785 0.87 -0.4
811,876 + ABZR87_RS19785 0.87 -1.0
811,877 - ABZR87_RS19785 0.87 -0.3
811,877 - ABZR87_RS19785 0.87 +1.8
812,062 - -0.8
812,204 + ABZR87_RS19790 0.14 -0.2
812,204 + ABZR87_RS19790 0.14 +0.8
812,205 - ABZR87_RS19790 0.15 -0.3
812,205 - ABZR87_RS19790 0.15 +0.1
812,205 - ABZR87_RS19790 0.15 -0.3
812,205 - ABZR87_RS19790 0.15 +2.6
812,244 + ABZR87_RS19790 0.23 -0.7
812,244 + ABZR87_RS19790 0.23 +0.5
812,245 - ABZR87_RS19790 0.23 -0.0
812,245 - ABZR87_RS19790 0.23 -0.1
812,245 - ABZR87_RS19790 0.23 -0.0
812,383 + ABZR87_RS19790 0.52 +2.6
812,441 + ABZR87_RS19790 0.64 -0.6
812,441 + ABZR87_RS19790 0.64 -0.2
812,442 - ABZR87_RS19790 0.64 +1.3
812,442 - ABZR87_RS19790 0.64 +0.6
812,442 - ABZR87_RS19790 0.64 -0.0
812,442 - ABZR87_RS19790 0.64 +0.9
812,444 + ABZR87_RS19790 0.65 -0.5
812,444 + ABZR87_RS19790 0.65 -0.1
812,444 + ABZR87_RS19790 0.65 -0.0
812,444 + ABZR87_RS19790 0.65 +0.2
812,445 - ABZR87_RS19790 0.65 -0.8
812,445 - ABZR87_RS19790 0.65 +0.7
812,501 + ABZR87_RS19790 0.77 -0.2
812,502 - ABZR87_RS19790 0.77 +2.6
812,502 - ABZR87_RS19790 0.77 +0.8
812,502 - ABZR87_RS19790 0.77 -1.9
812,649 + -0.4
812,663 + -0.7
812,663 + +0.5
812,663 + +0.7
812,663 + -0.6
812,664 - -1.7
812,664 - -1.1
812,664 - -0.2
812,664 - -0.6
812,664 - +0.1
812,664 - +0.6
812,664 - +1.1
812,664 - -1.7
812,665 + -1.4
812,665 + +0.6
812,665 + -1.4
812,665 + +0.1
812,666 - -0.5
812,711 + +0.9
812,712 - +0.1
812,740 + -0.3
812,741 - -0.0
812,741 - -0.8
812,741 - -0.1
812,755 + -0.0
812,755 + -0.2
812,756 - -0.8
812,961 - ABZR87_RS19795 0.11 -1.9
812,961 - ABZR87_RS19795 0.11 -0.6
812,978 + ABZR87_RS19795 0.12 -0.4
812,979 - ABZR87_RS19795 0.12 -0.8
813,095 + ABZR87_RS19795 0.19 -0.5
813,095 + ABZR87_RS19795 0.19 +0.2
813,095 + ABZR87_RS19795 0.19 +0.3
813,096 - ABZR87_RS19795 0.19 +0.1
813,096 - ABZR87_RS19795 0.19 -0.7
813,096 - ABZR87_RS19795 0.19 +0.1
813,185 + ABZR87_RS19795 0.24 +0.6
813,185 + ABZR87_RS19795 0.24 +0.6
813,200 + ABZR87_RS19795 0.25 -2.1
813,200 + ABZR87_RS19795 0.25 -1.7
813,201 - ABZR87_RS19795 0.25 -0.1
813,443 + ABZR87_RS19795 0.39 +0.6
813,443 + ABZR87_RS19795 0.39 +1.0
813,443 + ABZR87_RS19795 0.39 -0.1
813,444 - ABZR87_RS19795 0.39 -1.6
813,444 - ABZR87_RS19795 0.39 +1.1
813,444 - ABZR87_RS19795 0.39 +0.2
813,524 + ABZR87_RS19795 0.44 +0.2
813,524 + ABZR87_RS19795 0.44 +0.3
813,524 + ABZR87_RS19795 0.44 -0.1
813,525 - ABZR87_RS19795 0.44 +0.1
813,525 - ABZR87_RS19795 0.44 +0.4
813,569 + ABZR87_RS19795 0.46 -0.4
813,569 + ABZR87_RS19795 0.46 -0.3
813,570 - ABZR87_RS19795 0.46 +0.9
813,570 - ABZR87_RS19795 0.46 -1.5

Or see this region's nucleotide sequence