Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19735 and ABZR87_RS19740 are separated by 13 nucleotides ABZR87_RS19740 and ABZR87_RS19745 are separated by 61 nucleotides ABZR87_RS19745 and ABZR87_RS19750 overlap by 4 nucleotides ABZR87_RS19750 and ABZR87_RS19755 overlap by 14 nucleotides ABZR87_RS19755 and ABZR87_RS19760 are separated by 22 nucleotides
ABZR87_RS19735: ABZR87_RS19735 - hypothetical protein, at 804,739 to 805,161
_RS19735
ABZR87_RS19740: ABZR87_RS19740 - BON domain-containing protein, at 805,175 to 805,591
_RS19740
ABZR87_RS19745: ABZR87_RS19745 - DoxX family protein, at 805,653 to 806,123
_RS19745
ABZR87_RS19750: ABZR87_RS19750 - DNA-binding domain-containing protein, at 806,120 to 806,878
_RS19750
ABZR87_RS19755: ABZR87_RS19755 - DUF692 domain-containing protein, at 806,865 to 807,734
_RS19755
ABZR87_RS19760: ABZR87_RS19760 - DUF2282 domain-containing protein, at 807,757 to 808,023
_RS19760
Position (kb) 806
807 Strain fitness (log2 ratio) -1
0
1
2 at 805.230 kb on + strand, within ABZR87_RS19740 at 805.230 kb on + strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.346 kb on - strand, within ABZR87_RS19740 at 805.449 kb on + strand, within ABZR87_RS19740 at 805.450 kb on - strand, within ABZR87_RS19740 at 805.450 kb on - strand, within ABZR87_RS19740 at 805.450 kb on - strand, within ABZR87_RS19740 at 805.520 kb on - strand, within ABZR87_RS19740 at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.629 kb on - strand at 805.629 kb on - strand at 805.629 kb on - strand at 805.780 kb on + strand, within ABZR87_RS19745 at 805.780 kb on + strand, within ABZR87_RS19745 at 805.780 kb on + strand, within ABZR87_RS19745 at 805.927 kb on + strand, within ABZR87_RS19745 at 805.928 kb on - strand, within ABZR87_RS19745 at 805.928 kb on - strand, within ABZR87_RS19745 at 805.999 kb on + strand, within ABZR87_RS19745 at 806.000 kb on - strand, within ABZR87_RS19745 at 806.000 kb on - strand, within ABZR87_RS19745 at 806.008 kb on + strand, within ABZR87_RS19745 at 806.091 kb on - strand at 806.138 kb on - strand at 806.185 kb on - strand at 806.290 kb on + strand, within ABZR87_RS19750 at 806.541 kb on + strand, within ABZR87_RS19750 at 806.541 kb on + strand, within ABZR87_RS19750 at 806.542 kb on - strand, within ABZR87_RS19750 at 806.590 kb on - strand, within ABZR87_RS19750 at 806.745 kb on + strand, within ABZR87_RS19750 at 806.746 kb on - strand, within ABZR87_RS19750 at 806.794 kb on - strand, within ABZR87_RS19750 at 807.028 kb on + strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.062 kb on + strand, within ABZR87_RS19755 at 807.187 kb on + strand, within ABZR87_RS19755 at 807.301 kb on + strand, within ABZR87_RS19755 at 807.394 kb on + strand, within ABZR87_RS19755 at 807.395 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.758 kb on + strand at 807.815 kb on + strand, within ABZR87_RS19760 at 807.815 kb on + strand, within ABZR87_RS19760 at 807.815 kb on + strand, within ABZR87_RS19760 at 807.815 kb on + strand, within ABZR87_RS19760 at 807.816 kb on - strand, within ABZR87_RS19760 at 807.816 kb on - strand, within ABZR87_RS19760
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 805,230 + ABZR87_RS19740 0.13 -0.6 805,230 + ABZR87_RS19740 0.13 -0.3 805,231 - ABZR87_RS19740 0.13 -0.9 805,231 - ABZR87_RS19740 0.13 -0.3 805,231 - ABZR87_RS19740 0.13 +0.7 805,231 - ABZR87_RS19740 0.13 -1.2 805,231 - ABZR87_RS19740 0.13 +0.7 805,346 - ABZR87_RS19740 0.41 -0.5 805,449 + ABZR87_RS19740 0.66 -1.2 805,450 - ABZR87_RS19740 0.66 +1.8 805,450 - ABZR87_RS19740 0.66 -0.8 805,450 - ABZR87_RS19740 0.66 +0.1 805,520 - ABZR87_RS19740 0.83 -0.4 805,628 + -0.1 805,628 + -0.1 805,628 + +0.8 805,628 + +0.4 805,628 + +0.2 805,628 + +0.0 805,628 + +0.0 805,629 - +0.8 805,629 - -0.1 805,629 - +1.5 805,780 + ABZR87_RS19745 0.27 -0.2 805,780 + ABZR87_RS19745 0.27 -0.4 805,780 + ABZR87_RS19745 0.27 +0.8 805,927 + ABZR87_RS19745 0.58 +1.0 805,928 - ABZR87_RS19745 0.58 +0.6 805,928 - ABZR87_RS19745 0.58 +0.4 805,999 + ABZR87_RS19745 0.73 -1.6 806,000 - ABZR87_RS19745 0.74 +0.5 806,000 - ABZR87_RS19745 0.74 -0.7 806,008 + ABZR87_RS19745 0.75 +1.0 806,091 - -0.9 806,138 - +0.9 806,185 - +0.2 806,290 + ABZR87_RS19750 0.22 -1.2 806,541 + ABZR87_RS19750 0.55 -0.3 806,541 + ABZR87_RS19750 0.55 +1.2 806,542 - ABZR87_RS19750 0.56 +0.1 806,590 - ABZR87_RS19750 0.62 -0.7 806,745 + ABZR87_RS19750 0.82 -1.3 806,746 - ABZR87_RS19750 0.82 +0.6 806,794 - ABZR87_RS19750 0.89 -1.3 807,028 + ABZR87_RS19755 0.19 +0.5 807,029 - ABZR87_RS19755 0.19 +0.3 807,029 - ABZR87_RS19755 0.19 +0.0 807,029 - ABZR87_RS19755 0.19 -1.5 807,029 - ABZR87_RS19755 0.19 +2.0 807,062 + ABZR87_RS19755 0.23 +0.9 807,187 + ABZR87_RS19755 0.37 +1.4 807,301 + ABZR87_RS19755 0.50 +1.3 807,394 + ABZR87_RS19755 0.61 -0.5 807,395 - ABZR87_RS19755 0.61 -0.2 807,617 - ABZR87_RS19755 0.86 +0.5 807,617 - ABZR87_RS19755 0.86 -0.1 807,617 - ABZR87_RS19755 0.86 -0.8 807,617 - ABZR87_RS19755 0.86 +0.6 807,622 + ABZR87_RS19755 0.87 -1.7 807,622 + ABZR87_RS19755 0.87 +0.9 807,622 + ABZR87_RS19755 0.87 +0.9 807,622 + ABZR87_RS19755 0.87 +0.9 807,622 + ABZR87_RS19755 0.87 +0.1 807,622 + ABZR87_RS19755 0.87 +0.1 807,623 - ABZR87_RS19755 0.87 +0.6 807,623 - ABZR87_RS19755 0.87 -0.7 807,623 - ABZR87_RS19755 0.87 -1.0 807,623 - ABZR87_RS19755 0.87 -0.7 807,623 - ABZR87_RS19755 0.87 +0.1 807,623 - ABZR87_RS19755 0.87 +0.6 807,623 - ABZR87_RS19755 0.87 -0.6 807,623 - ABZR87_RS19755 0.87 +0.3 807,758 + -0.3 807,815 + ABZR87_RS19760 0.22 -0.7 807,815 + ABZR87_RS19760 0.22 +0.1 807,815 + ABZR87_RS19760 0.22 -1.1 807,815 + ABZR87_RS19760 0.22 -1.7 807,816 - ABZR87_RS19760 0.22 -0.7 807,816 - ABZR87_RS19760 0.22 -0.9
Or see this region's nucleotide sequence