Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19430 and ABZR87_RS19435 overlap by 4 nucleotides ABZR87_RS19435 and ABZR87_RS19440 are separated by 193 nucleotides ABZR87_RS19440 and ABZR87_RS19445 overlap by 4 nucleotides
ABZR87_RS19430: ABZR87_RS19430 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 728,297 to 729,727
_RS19430
ABZR87_RS19435: ABZR87_RS19435 - trehalose-phosphatase, at 729,724 to 730,524
_RS19435
ABZR87_RS19440: ABZR87_RS19440 - 2OG-Fe(II) oxygenase, at 730,718 to 731,377
_RS19440
ABZR87_RS19445: ABZR87_RS19445 - hypothetical protein, at 731,374 to 732,255
_RS19445
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1 at 728.751 kb on + strand, within ABZR87_RS19430 at 728.751 kb on + strand, within ABZR87_RS19430 at 728.751 kb on + strand, within ABZR87_RS19430 at 728.751 kb on + strand, within ABZR87_RS19430 at 728.752 kb on - strand, within ABZR87_RS19430 at 728.752 kb on - strand, within ABZR87_RS19430 at 729.045 kb on + strand, within ABZR87_RS19430 at 729.111 kb on + strand, within ABZR87_RS19430 at 729.112 kb on - strand, within ABZR87_RS19430 at 729.112 kb on - strand, within ABZR87_RS19430 at 729.112 kb on - strand, within ABZR87_RS19430 at 729.135 kb on + strand, within ABZR87_RS19430 at 729.135 kb on + strand, within ABZR87_RS19430 at 729.135 kb on + strand, within ABZR87_RS19430 at 729.135 kb on + strand, within ABZR87_RS19430 at 729.136 kb on - strand, within ABZR87_RS19430 at 729.186 kb on + strand, within ABZR87_RS19430 at 729.186 kb on + strand, within ABZR87_RS19430 at 729.186 kb on + strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.330 kb on + strand, within ABZR87_RS19430 at 729.331 kb on - strand, within ABZR87_RS19430 at 729.331 kb on - strand, within ABZR87_RS19430 at 729.417 kb on + strand, within ABZR87_RS19430 at 729.417 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.499 kb on - strand, within ABZR87_RS19430 at 729.499 kb on - strand, within ABZR87_RS19430 at 729.499 kb on - strand, within ABZR87_RS19430 at 729.508 kb on - strand, within ABZR87_RS19430 at 729.508 kb on - strand, within ABZR87_RS19430 at 729.508 kb on - strand, within ABZR87_RS19430 at 729.538 kb on - strand, within ABZR87_RS19430 at 729.538 kb on - strand, within ABZR87_RS19430 at 730.025 kb on + strand, within ABZR87_RS19435 at 730.026 kb on - strand, within ABZR87_RS19435 at 730.089 kb on - strand, within ABZR87_RS19435 at 730.235 kb on + strand, within ABZR87_RS19435 at 730.235 kb on + strand, within ABZR87_RS19435 at 730.549 kb on + strand at 730.550 kb on - strand at 730.550 kb on - strand at 730.550 kb on - strand at 730.647 kb on - strand at 730.647 kb on - strand at 730.899 kb on + strand, within ABZR87_RS19440 at 730.899 kb on + strand, within ABZR87_RS19440 at 730.899 kb on + strand, within ABZR87_RS19440 at 730.900 kb on - strand, within ABZR87_RS19440 at 730.900 kb on - strand, within ABZR87_RS19440 at 730.900 kb on - strand, within ABZR87_RS19440 at 730.900 kb on - strand, within ABZR87_RS19440 at 730.948 kb on - strand, within ABZR87_RS19440 at 730.948 kb on - strand, within ABZR87_RS19440 at 730.950 kb on + strand, within ABZR87_RS19440 at 730.951 kb on - strand, within ABZR87_RS19440 at 730.951 kb on - strand, within ABZR87_RS19440 at 731.103 kb on + strand, within ABZR87_RS19440 at 731.223 kb on + strand, within ABZR87_RS19440 at 731.223 kb on + strand, within ABZR87_RS19440 at 731.408 kb on + strand at 731.408 kb on + strand at 731.408 kb on + strand at 731.408 kb on + strand at 731.409 kb on - strand at 731.409 kb on - strand at 731.484 kb on - strand, within ABZR87_RS19445 at 731.510 kb on + strand, within ABZR87_RS19445 at 731.510 kb on + strand, within ABZR87_RS19445 at 731.510 kb on + strand, within ABZR87_RS19445 at 731.510 kb on + strand, within ABZR87_RS19445 at 731.518 kb on + strand, within ABZR87_RS19445 at 731.519 kb on - strand, within ABZR87_RS19445 at 731.519 kb on - strand, within ABZR87_RS19445 at 731.519 kb on - strand, within ABZR87_RS19445 at 731.519 kb on - strand, within ABZR87_RS19445
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 728,751 + ABZR87_RS19430 0.32 -0.2 728,751 + ABZR87_RS19430 0.32 -0.3 728,751 + ABZR87_RS19430 0.32 +0.3 728,751 + ABZR87_RS19430 0.32 +0.2 728,752 - ABZR87_RS19430 0.32 -0.0 728,752 - ABZR87_RS19430 0.32 +0.6 729,045 + ABZR87_RS19430 0.52 -0.2 729,111 + ABZR87_RS19430 0.57 -0.9 729,112 - ABZR87_RS19430 0.57 -1.0 729,112 - ABZR87_RS19430 0.57 -0.5 729,112 - ABZR87_RS19430 0.57 +0.7 729,135 + ABZR87_RS19430 0.59 +0.4 729,135 + ABZR87_RS19430 0.59 +0.2 729,135 + ABZR87_RS19430 0.59 -0.6 729,135 + ABZR87_RS19430 0.59 +0.8 729,136 - ABZR87_RS19430 0.59 +0.2 729,186 + ABZR87_RS19430 0.62 +0.1 729,186 + ABZR87_RS19430 0.62 -0.5 729,186 + ABZR87_RS19430 0.62 +0.1 729,187 - ABZR87_RS19430 0.62 -0.4 729,187 - ABZR87_RS19430 0.62 +0.5 729,187 - ABZR87_RS19430 0.62 -0.2 729,187 - ABZR87_RS19430 0.62 -0.3 729,187 - ABZR87_RS19430 0.62 +0.1 729,187 - ABZR87_RS19430 0.62 +0.5 729,187 - ABZR87_RS19430 0.62 -0.1 729,330 + ABZR87_RS19430 0.72 -0.4 729,331 - ABZR87_RS19430 0.72 -0.0 729,331 - ABZR87_RS19430 0.72 -1.1 729,417 + ABZR87_RS19430 0.78 +0.8 729,417 + ABZR87_RS19430 0.78 -0.1 729,498 + ABZR87_RS19430 0.84 +0.8 729,498 + ABZR87_RS19430 0.84 -0.1 729,498 + ABZR87_RS19430 0.84 +0.5 729,498 + ABZR87_RS19430 0.84 +0.4 729,498 + ABZR87_RS19430 0.84 -0.9 729,499 - ABZR87_RS19430 0.84 -1.2 729,499 - ABZR87_RS19430 0.84 +1.1 729,499 - ABZR87_RS19430 0.84 -1.9 729,508 - ABZR87_RS19430 0.85 +0.5 729,508 - ABZR87_RS19430 0.85 -0.4 729,508 - ABZR87_RS19430 0.85 -0.3 729,538 - ABZR87_RS19430 0.87 -0.1 729,538 - ABZR87_RS19430 0.87 +0.0 730,025 + ABZR87_RS19435 0.38 -1.3 730,026 - ABZR87_RS19435 0.38 -0.9 730,089 - ABZR87_RS19435 0.46 -1.0 730,235 + ABZR87_RS19435 0.64 -1.4 730,235 + ABZR87_RS19435 0.64 -1.4 730,549 + -1.4 730,550 - +0.1 730,550 - -0.9 730,550 - -1.0 730,647 - -0.5 730,647 - -0.3 730,899 + ABZR87_RS19440 0.27 -0.7 730,899 + ABZR87_RS19440 0.27 -1.1 730,899 + ABZR87_RS19440 0.27 -0.4 730,900 - ABZR87_RS19440 0.28 -0.6 730,900 - ABZR87_RS19440 0.28 -2.3 730,900 - ABZR87_RS19440 0.28 -0.2 730,900 - ABZR87_RS19440 0.28 +0.6 730,948 - ABZR87_RS19440 0.35 +0.6 730,948 - ABZR87_RS19440 0.35 -0.4 730,950 + ABZR87_RS19440 0.35 +0.2 730,951 - ABZR87_RS19440 0.35 -0.6 730,951 - ABZR87_RS19440 0.35 +0.8 731,103 + ABZR87_RS19440 0.58 -0.2 731,223 + ABZR87_RS19440 0.77 +0.6 731,223 + ABZR87_RS19440 0.77 -0.1 731,408 + -1.0 731,408 + -1.2 731,408 + -0.4 731,408 + -1.7 731,409 - +0.2 731,409 - -0.9 731,484 - ABZR87_RS19445 0.12 +0.7 731,510 + ABZR87_RS19445 0.15 +0.1 731,510 + ABZR87_RS19445 0.15 -0.5 731,510 + ABZR87_RS19445 0.15 -0.2 731,510 + ABZR87_RS19445 0.15 +0.1 731,518 + ABZR87_RS19445 0.16 +0.7 731,519 - ABZR87_RS19445 0.16 -0.1 731,519 - ABZR87_RS19445 0.16 -2.3 731,519 - ABZR87_RS19445 0.16 +1.6 731,519 - ABZR87_RS19445 0.16 -1.9
Or see this region's nucleotide sequence