Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19285 and ABZR87_RS19290 are separated by 157 nucleotides ABZR87_RS19290 and ABZR87_RS19295 are separated by 61 nucleotides ABZR87_RS19295 and ABZR87_RS19300 are separated by 1 nucleotides ABZR87_RS19300 and ABZR87_RS19305 overlap by 4 nucleotides
ABZR87_RS19285: ABZR87_RS19285 - FHA domain-containing protein, at 689,006 to 690,109
_RS19285
ABZR87_RS19290: ABZR87_RS19290 - hypothetical protein, at 690,267 to 690,470
_RS19290
ABZR87_RS19295: ABZR87_RS19295 - hypothetical protein, at 690,532 to 691,113
_RS19295
ABZR87_RS19300: ABZR87_RS19300 - type III secretion system inner membrane ring lipoprotein SctJ, at 691,115 to 691,882
_RS19300
ABZR87_RS19305: ABZR87_RS19305 - SctK family type III secretion system sorting platform protein, at 691,879 to 692,541
_RS19305
Position (kb) 690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 689.582 kb on + strand, within ABZR87_RS19285 at 689.660 kb on + strand, within ABZR87_RS19285 at 689.660 kb on + strand, within ABZR87_RS19285 at 689.660 kb on + strand, within ABZR87_RS19285 at 689.661 kb on - strand, within ABZR87_RS19285 at 689.661 kb on - strand, within ABZR87_RS19285 at 689.697 kb on - strand, within ABZR87_RS19285 at 689.745 kb on - strand, within ABZR87_RS19285 at 689.816 kb on + strand, within ABZR87_RS19285 at 689.816 kb on + strand, within ABZR87_RS19285 at 689.817 kb on - strand, within ABZR87_RS19285 at 689.940 kb on - strand, within ABZR87_RS19285 at 689.940 kb on - strand, within ABZR87_RS19285 at 689.990 kb on + strand, within ABZR87_RS19285 at 689.991 kb on - strand, within ABZR87_RS19285 at 690.107 kb on + strand at 690.131 kb on + strand at 690.132 kb on - strand at 690.132 kb on - strand at 690.149 kb on + strand at 690.150 kb on - strand at 690.207 kb on + strand at 690.208 kb on - strand at 690.629 kb on + strand, within ABZR87_RS19295 at 690.629 kb on + strand, within ABZR87_RS19295 at 690.629 kb on + strand, within ABZR87_RS19295 at 690.630 kb on - strand, within ABZR87_RS19295 at 690.896 kb on - strand, within ABZR87_RS19295 at 690.919 kb on + strand, within ABZR87_RS19295 at 690.919 kb on + strand, within ABZR87_RS19295 at 691.013 kb on - strand, within ABZR87_RS19295 at 691.013 kb on - strand, within ABZR87_RS19295 at 691.040 kb on - strand, within ABZR87_RS19295 at 691.188 kb on - strand at 691.188 kb on - strand at 691.188 kb on - strand at 691.446 kb on - strand, within ABZR87_RS19300 at 691.451 kb on + strand, within ABZR87_RS19300 at 691.452 kb on - strand, within ABZR87_RS19300 at 691.452 kb on - strand, within ABZR87_RS19300 at 691.515 kb on + strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.580 kb on + strand, within ABZR87_RS19300 at 691.580 kb on + strand, within ABZR87_RS19300 at 691.580 kb on + strand, within ABZR87_RS19300 at 691.667 kb on + strand, within ABZR87_RS19300 at 691.667 kb on + strand, within ABZR87_RS19300 at 691.668 kb on - strand, within ABZR87_RS19300 at 691.668 kb on - strand, within ABZR87_RS19300 at 691.677 kb on + strand, within ABZR87_RS19300 at 691.678 kb on - strand, within ABZR87_RS19300 at 691.840 kb on - strand at 691.840 kb on - strand at 691.939 kb on + strand at 691.939 kb on + strand at 691.940 kb on - strand at 691.942 kb on - strand at 691.942 kb on - strand at 692.072 kb on - strand, within ABZR87_RS19305
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 689,582 + ABZR87_RS19285 0.52 -0.1 689,660 + ABZR87_RS19285 0.59 +0.3 689,660 + ABZR87_RS19285 0.59 +0.8 689,660 + ABZR87_RS19285 0.59 -2.0 689,661 - ABZR87_RS19285 0.59 +0.2 689,661 - ABZR87_RS19285 0.59 -2.4 689,697 - ABZR87_RS19285 0.63 +0.5 689,745 - ABZR87_RS19285 0.67 +0.6 689,816 + ABZR87_RS19285 0.73 -0.4 689,816 + ABZR87_RS19285 0.73 -0.0 689,817 - ABZR87_RS19285 0.73 +0.7 689,940 - ABZR87_RS19285 0.85 +1.8 689,940 - ABZR87_RS19285 0.85 +1.8 689,990 + ABZR87_RS19285 0.89 +0.2 689,991 - ABZR87_RS19285 0.89 +1.6 690,107 + +0.3 690,131 + +1.0 690,132 - +0.7 690,132 - +1.0 690,149 + +1.6 690,150 - -0.0 690,207 + -0.7 690,208 - -0.5 690,629 + ABZR87_RS19295 0.17 -0.3 690,629 + ABZR87_RS19295 0.17 +0.1 690,629 + ABZR87_RS19295 0.17 -1.7 690,630 - ABZR87_RS19295 0.17 -0.5 690,896 - ABZR87_RS19295 0.63 +0.1 690,919 + ABZR87_RS19295 0.66 -0.6 690,919 + ABZR87_RS19295 0.66 +0.1 691,013 - ABZR87_RS19295 0.83 -0.4 691,013 - ABZR87_RS19295 0.83 -1.2 691,040 - ABZR87_RS19295 0.87 +0.1 691,188 - +0.4 691,188 - -0.5 691,188 - +0.1 691,446 - ABZR87_RS19300 0.43 +0.3 691,451 + ABZR87_RS19300 0.44 -0.4 691,452 - ABZR87_RS19300 0.44 -0.5 691,452 - ABZR87_RS19300 0.44 -0.9 691,515 + ABZR87_RS19300 0.52 +1.0 691,516 - ABZR87_RS19300 0.52 +0.5 691,516 - ABZR87_RS19300 0.52 -1.2 691,516 - ABZR87_RS19300 0.52 -0.5 691,516 - ABZR87_RS19300 0.52 +0.4 691,580 + ABZR87_RS19300 0.61 -0.7 691,580 + ABZR87_RS19300 0.61 -3.1 691,580 + ABZR87_RS19300 0.61 -0.7 691,667 + ABZR87_RS19300 0.72 -0.7 691,667 + ABZR87_RS19300 0.72 +0.6 691,668 - ABZR87_RS19300 0.72 +0.8 691,668 - ABZR87_RS19300 0.72 -0.3 691,677 + ABZR87_RS19300 0.73 -0.2 691,678 - ABZR87_RS19300 0.73 -0.3 691,840 - +0.5 691,840 - -1.7 691,939 + +1.3 691,939 + -0.4 691,940 - +1.3 691,942 - +0.1 691,942 - -0.2 692,072 - ABZR87_RS19305 0.29 -0.5
Or see this region's nucleotide sequence