Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19245 and ABZR87_RS19250 are separated by 68 nucleotides ABZR87_RS19250 and ABZR87_RS19255 are separated by 59 nucleotides ABZR87_RS19255 and ABZR87_RS19260 are separated by 56 nucleotides
ABZR87_RS19245: ABZR87_RS19245 - LuxR family transcriptional regulator, at 679,814 to 680,917
_RS19245
ABZR87_RS19250: ABZR87_RS19250 - lytic transglycosylase domain-containing protein, at 680,986 to 681,717
_RS19250
ABZR87_RS19255: ABZR87_RS19255 - type III secretion system export apparatus subunit SctR, at 681,777 to 682,436
_RS19255
ABZR87_RS19260: ABZR87_RS19260 - type III secretion system cytoplasmic ring protein SctQ, at 682,493 to 683,578
_RS19260
Position (kb) 680
681
682 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 680.028 kb on + strand, within ABZR87_RS19245 at 680.282 kb on + strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.367 kb on - strand, within ABZR87_RS19245 at 680.705 kb on - strand, within ABZR87_RS19245 at 680.705 kb on - strand, within ABZR87_RS19245 at 680.832 kb on - strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.889 kb on - strand at 680.889 kb on - strand at 680.889 kb on - strand at 681.251 kb on + strand, within ABZR87_RS19250 at 681.252 kb on - strand, within ABZR87_RS19250 at 681.252 kb on - strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.288 kb on - strand, within ABZR87_RS19250 at 681.290 kb on + strand, within ABZR87_RS19250 at 681.290 kb on + strand, within ABZR87_RS19250 at 681.291 kb on - strand, within ABZR87_RS19250 at 681.891 kb on + strand, within ABZR87_RS19255 at 681.943 kb on + strand, within ABZR87_RS19255 at 681.944 kb on - strand, within ABZR87_RS19255 at 681.944 kb on - strand, within ABZR87_RS19255 at 682.100 kb on + strand, within ABZR87_RS19255 at 682.100 kb on + strand, within ABZR87_RS19255 at 682.101 kb on - strand, within ABZR87_RS19255 at 682.101 kb on - strand, within ABZR87_RS19255 at 682.349 kb on - strand, within ABZR87_RS19255 at 682.349 kb on - strand, within ABZR87_RS19255 at 682.451 kb on + strand at 682.451 kb on + strand at 682.452 kb on - strand at 682.494 kb on + strand at 682.495 kb on - strand at 682.495 kb on - strand at 682.520 kb on + strand at 682.520 kb on + strand at 682.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 680,028 + ABZR87_RS19245 0.19 +0.2 680,282 + ABZR87_RS19245 0.42 +0.6 680,283 - ABZR87_RS19245 0.42 +0.8 680,283 - ABZR87_RS19245 0.42 +0.6 680,339 + ABZR87_RS19245 0.48 +1.0 680,339 + ABZR87_RS19245 0.48 +0.2 680,339 + ABZR87_RS19245 0.48 +0.3 680,340 - ABZR87_RS19245 0.48 +0.6 680,340 - ABZR87_RS19245 0.48 -0.2 680,340 - ABZR87_RS19245 0.48 -0.2 680,367 - ABZR87_RS19245 0.50 +0.5 680,705 - ABZR87_RS19245 0.81 -0.8 680,705 - ABZR87_RS19245 0.81 -0.2 680,832 - -1.2 680,888 + -0.2 680,888 + +0.2 680,888 + +0.4 680,888 + -2.7 680,889 - +0.2 680,889 - -0.8 680,889 - -0.5 681,251 + ABZR87_RS19250 0.36 -0.0 681,252 - ABZR87_RS19250 0.36 +2.1 681,252 - ABZR87_RS19250 0.36 -0.8 681,287 + ABZR87_RS19250 0.41 +0.0 681,287 + ABZR87_RS19250 0.41 -0.2 681,287 + ABZR87_RS19250 0.41 +0.3 681,287 + ABZR87_RS19250 0.41 -0.1 681,288 - ABZR87_RS19250 0.41 +0.4 681,290 + ABZR87_RS19250 0.42 -0.3 681,290 + ABZR87_RS19250 0.42 +0.3 681,291 - ABZR87_RS19250 0.42 +0.6 681,891 + ABZR87_RS19255 0.17 +1.7 681,943 + ABZR87_RS19255 0.25 +0.6 681,944 - ABZR87_RS19255 0.25 -0.1 681,944 - ABZR87_RS19255 0.25 -0.2 682,100 + ABZR87_RS19255 0.49 -0.6 682,100 + ABZR87_RS19255 0.49 +3.0 682,101 - ABZR87_RS19255 0.49 +2.6 682,101 - ABZR87_RS19255 0.49 -1.1 682,349 - ABZR87_RS19255 0.87 -0.2 682,349 - ABZR87_RS19255 0.87 -0.2 682,451 + -0.7 682,451 + -0.3 682,452 - +0.8 682,494 + +2.1 682,495 - +0.3 682,495 - +0.5 682,520 + -1.3 682,520 + +0.3 682,521 - -1.2
Or see this region's nucleotide sequence