Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19240 and ABZR87_RS19245 are separated by 449 nucleotides ABZR87_RS19245 and ABZR87_RS19250 are separated by 68 nucleotides ABZR87_RS19250 and ABZR87_RS19255 are separated by 59 nucleotides
ABZR87_RS19240: ABZR87_RS19240 - molybdate ABC transporter permease subunit, at 678,678 to 679,364
_RS19240
ABZR87_RS19245: ABZR87_RS19245 - LuxR family transcriptional regulator, at 679,814 to 680,917
_RS19245
ABZR87_RS19250: ABZR87_RS19250 - lytic transglycosylase domain-containing protein, at 680,986 to 681,717
_RS19250
ABZR87_RS19255: ABZR87_RS19255 - type III secretion system export apparatus subunit SctR, at 681,777 to 682,436
_RS19255
Position (kb) 679
680
681 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.818 kb on - strand, within ABZR87_RS19240 at 679.086 kb on + strand, within ABZR87_RS19240 at 679.087 kb on - strand, within ABZR87_RS19240 at 679.087 kb on - strand, within ABZR87_RS19240 at 679.103 kb on + strand, within ABZR87_RS19240 at 679.103 kb on + strand, within ABZR87_RS19240 at 679.104 kb on - strand, within ABZR87_RS19240 at 679.104 kb on - strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.180 kb on + strand, within ABZR87_RS19240 at 679.181 kb on - strand, within ABZR87_RS19240 at 679.271 kb on - strand, within ABZR87_RS19240 at 679.468 kb on + strand at 679.468 kb on + strand at 679.468 kb on + strand at 679.469 kb on - strand at 679.469 kb on - strand at 679.480 kb on + strand at 679.480 kb on + strand at 679.481 kb on - strand at 679.481 kb on - strand at 679.585 kb on + strand at 679.586 kb on - strand at 679.586 kb on - strand at 679.586 kb on - strand at 679.851 kb on + strand at 679.851 kb on + strand at 679.852 kb on - strand at 679.906 kb on + strand at 679.907 kb on - strand at 680.028 kb on + strand, within ABZR87_RS19245 at 680.282 kb on + strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.367 kb on - strand, within ABZR87_RS19245 at 680.705 kb on - strand, within ABZR87_RS19245 at 680.705 kb on - strand, within ABZR87_RS19245 at 680.832 kb on - strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.889 kb on - strand at 680.889 kb on - strand at 680.889 kb on - strand at 681.251 kb on + strand, within ABZR87_RS19250 at 681.252 kb on - strand, within ABZR87_RS19250 at 681.252 kb on - strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.288 kb on - strand, within ABZR87_RS19250 at 681.290 kb on + strand, within ABZR87_RS19250 at 681.290 kb on + strand, within ABZR87_RS19250 at 681.291 kb on - strand, within ABZR87_RS19250 at 681.891 kb on + strand, within ABZR87_RS19255
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 678,817 + ABZR87_RS19240 0.20 -1.0 678,817 + ABZR87_RS19240 0.20 -0.2 678,817 + ABZR87_RS19240 0.20 +0.2 678,818 - ABZR87_RS19240 0.20 +0.4 679,086 + ABZR87_RS19240 0.59 -0.2 679,087 - ABZR87_RS19240 0.60 +0.6 679,087 - ABZR87_RS19240 0.60 +0.3 679,103 + ABZR87_RS19240 0.62 -0.7 679,103 + ABZR87_RS19240 0.62 -0.9 679,104 - ABZR87_RS19240 0.62 -1.2 679,104 - ABZR87_RS19240 0.62 -0.6 679,177 + ABZR87_RS19240 0.73 -1.4 679,177 + ABZR87_RS19240 0.73 -0.9 679,177 + ABZR87_RS19240 0.73 -0.5 679,177 + ABZR87_RS19240 0.73 -0.4 679,178 - ABZR87_RS19240 0.73 -0.2 679,178 - ABZR87_RS19240 0.73 +0.4 679,178 - ABZR87_RS19240 0.73 -0.0 679,180 + ABZR87_RS19240 0.73 -0.3 679,181 - ABZR87_RS19240 0.73 -1.1 679,271 - ABZR87_RS19240 0.86 -0.0 679,468 + +0.1 679,468 + -1.4 679,468 + +0.1 679,469 - +0.6 679,469 - +0.0 679,480 + -0.6 679,480 + +1.3 679,481 - -0.6 679,481 - +2.8 679,585 + -0.3 679,586 - +0.0 679,586 - -0.7 679,586 - +0.6 679,851 + +0.1 679,851 + +0.3 679,852 - -1.2 679,906 + +0.1 679,907 - +0.1 680,028 + ABZR87_RS19245 0.19 +0.2 680,282 + ABZR87_RS19245 0.42 +0.6 680,283 - ABZR87_RS19245 0.42 +0.8 680,283 - ABZR87_RS19245 0.42 +0.6 680,339 + ABZR87_RS19245 0.48 +1.0 680,339 + ABZR87_RS19245 0.48 +0.2 680,339 + ABZR87_RS19245 0.48 +0.3 680,340 - ABZR87_RS19245 0.48 +0.6 680,340 - ABZR87_RS19245 0.48 -0.2 680,340 - ABZR87_RS19245 0.48 -0.2 680,367 - ABZR87_RS19245 0.50 +0.5 680,705 - ABZR87_RS19245 0.81 -0.8 680,705 - ABZR87_RS19245 0.81 -0.2 680,832 - -1.2 680,888 + -0.2 680,888 + +0.2 680,888 + +0.4 680,888 + -2.7 680,889 - +0.2 680,889 - -0.8 680,889 - -0.5 681,251 + ABZR87_RS19250 0.36 -0.0 681,252 - ABZR87_RS19250 0.36 +2.1 681,252 - ABZR87_RS19250 0.36 -0.8 681,287 + ABZR87_RS19250 0.41 +0.0 681,287 + ABZR87_RS19250 0.41 -0.2 681,287 + ABZR87_RS19250 0.41 +0.3 681,287 + ABZR87_RS19250 0.41 -0.1 681,288 - ABZR87_RS19250 0.41 +0.4 681,290 + ABZR87_RS19250 0.42 -0.3 681,290 + ABZR87_RS19250 0.42 +0.3 681,291 - ABZR87_RS19250 0.42 +0.6 681,891 + ABZR87_RS19255 0.17 +1.7
Or see this region's nucleotide sequence