Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19230 and ABZR87_RS19235 are separated by 2 nucleotides ABZR87_RS19235 and ABZR87_RS19240 overlap by 4 nucleotides ABZR87_RS19240 and ABZR87_RS19245 are separated by 449 nucleotides
ABZR87_RS19230: ABZR87_RS19230 - NAD(P)H-dependent oxidoreductase, at 677,438 to 677,935
_RS19230
ABZR87_RS19235: ABZR87_RS19235 - ATP-binding cassette domain-containing protein, at 677,938 to 678,681
_RS19235
ABZR87_RS19240: ABZR87_RS19240 - molybdate ABC transporter permease subunit, at 678,678 to 679,364
_RS19240
ABZR87_RS19245: ABZR87_RS19245 - LuxR family transcriptional regulator, at 679,814 to 680,917
_RS19245
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 677.706 kb on - strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.875 kb on - strand, within ABZR87_RS19230 at 678.040 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.407 kb on + strand, within ABZR87_RS19235 at 678.408 kb on - strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235 at 678.573 kb on - strand, within ABZR87_RS19235 at 678.681 kb on + strand at 678.681 kb on + strand at 678.681 kb on + strand at 678.681 kb on + strand at 678.682 kb on - strand at 678.682 kb on - strand at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.818 kb on - strand, within ABZR87_RS19240 at 679.086 kb on + strand, within ABZR87_RS19240 at 679.087 kb on - strand, within ABZR87_RS19240 at 679.087 kb on - strand, within ABZR87_RS19240 at 679.103 kb on + strand, within ABZR87_RS19240 at 679.103 kb on + strand, within ABZR87_RS19240 at 679.104 kb on - strand, within ABZR87_RS19240 at 679.104 kb on - strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.180 kb on + strand, within ABZR87_RS19240 at 679.181 kb on - strand, within ABZR87_RS19240 at 679.271 kb on - strand, within ABZR87_RS19240 at 679.468 kb on + strand at 679.468 kb on + strand at 679.468 kb on + strand at 679.469 kb on - strand at 679.469 kb on - strand at 679.480 kb on + strand at 679.480 kb on + strand at 679.481 kb on - strand at 679.481 kb on - strand at 679.585 kb on + strand at 679.586 kb on - strand at 679.586 kb on - strand at 679.586 kb on - strand at 679.851 kb on + strand at 679.851 kb on + strand at 679.852 kb on - strand at 679.906 kb on + strand at 679.907 kb on - strand at 680.028 kb on + strand, within ABZR87_RS19245 at 680.282 kb on + strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 677,706 - ABZR87_RS19230 0.54 -0.1 677,874 + ABZR87_RS19230 0.88 +0.2 677,874 + ABZR87_RS19230 0.88 -0.4 677,875 - ABZR87_RS19230 0.88 -1.0 678,040 + ABZR87_RS19235 0.14 +0.5 678,061 + ABZR87_RS19235 0.17 +0.3 678,061 + ABZR87_RS19235 0.17 -0.5 678,061 + ABZR87_RS19235 0.17 -0.2 678,062 - ABZR87_RS19235 0.17 -0.6 678,062 - ABZR87_RS19235 0.17 -0.4 678,062 - ABZR87_RS19235 0.17 +0.6 678,062 - ABZR87_RS19235 0.17 +0.6 678,082 - ABZR87_RS19235 0.19 -0.1 678,082 - ABZR87_RS19235 0.19 -0.9 678,407 + ABZR87_RS19235 0.63 -0.4 678,408 - ABZR87_RS19235 0.63 -2.3 678,422 + ABZR87_RS19235 0.65 -0.0 678,422 + ABZR87_RS19235 0.65 +0.6 678,573 - ABZR87_RS19235 0.85 +1.3 678,681 + -1.9 678,681 + +0.6 678,681 + -0.3 678,681 + +0.2 678,682 - +0.3 678,682 - +0.6 678,817 + ABZR87_RS19240 0.20 -1.0 678,817 + ABZR87_RS19240 0.20 -0.2 678,817 + ABZR87_RS19240 0.20 +0.2 678,818 - ABZR87_RS19240 0.20 +0.4 679,086 + ABZR87_RS19240 0.59 -0.2 679,087 - ABZR87_RS19240 0.60 +0.6 679,087 - ABZR87_RS19240 0.60 +0.3 679,103 + ABZR87_RS19240 0.62 -0.7 679,103 + ABZR87_RS19240 0.62 -0.9 679,104 - ABZR87_RS19240 0.62 -1.2 679,104 - ABZR87_RS19240 0.62 -0.6 679,177 + ABZR87_RS19240 0.73 -1.4 679,177 + ABZR87_RS19240 0.73 -0.9 679,177 + ABZR87_RS19240 0.73 -0.5 679,177 + ABZR87_RS19240 0.73 -0.4 679,178 - ABZR87_RS19240 0.73 -0.2 679,178 - ABZR87_RS19240 0.73 +0.4 679,178 - ABZR87_RS19240 0.73 -0.0 679,180 + ABZR87_RS19240 0.73 -0.3 679,181 - ABZR87_RS19240 0.73 -1.1 679,271 - ABZR87_RS19240 0.86 -0.0 679,468 + +0.1 679,468 + -1.4 679,468 + +0.1 679,469 - +0.6 679,469 - +0.0 679,480 + -0.6 679,480 + +1.3 679,481 - -0.6 679,481 - +2.8 679,585 + -0.3 679,586 - +0.0 679,586 - -0.7 679,586 - +0.6 679,851 + +0.1 679,851 + +0.3 679,852 - -1.2 679,906 + +0.1 679,907 - +0.1 680,028 + ABZR87_RS19245 0.19 +0.2 680,282 + ABZR87_RS19245 0.42 +0.6 680,283 - ABZR87_RS19245 0.42 +0.8 680,283 - ABZR87_RS19245 0.42 +0.6 680,339 + ABZR87_RS19245 0.48 +1.0 680,339 + ABZR87_RS19245 0.48 +0.2 680,339 + ABZR87_RS19245 0.48 +0.3 680,340 - ABZR87_RS19245 0.48 +0.6 680,340 - ABZR87_RS19245 0.48 -0.2 680,340 - ABZR87_RS19245 0.48 -0.2
Or see this region's nucleotide sequence