Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19215 and ABZR87_RS19220 are separated by 122 nucleotides ABZR87_RS19220 and ABZR87_RS19225 are separated by 66 nucleotides ABZR87_RS19225 and ABZR87_RS19230 are separated by 7 nucleotides ABZR87_RS19230 and ABZR87_RS19235 are separated by 2 nucleotides
ABZR87_RS19215: ABZR87_RS19215 - EAL domain-containing protein, at 673,175 to 675,925
_RS19215
ABZR87_RS19220: ABZR87_RS19220 - DUF6622 family protein, at 676,048 to 676,551
_RS19220
ABZR87_RS19225: ABZR87_RS19225 - TOBE domain-containing protein, at 676,618 to 677,430
_RS19225
ABZR87_RS19230: ABZR87_RS19230 - NAD(P)H-dependent oxidoreductase, at 677,438 to 677,935
_RS19230
ABZR87_RS19235: ABZR87_RS19235 - ATP-binding cassette domain-containing protein, at 677,938 to 678,681
_RS19235
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1 at 675.623 kb on + strand, within ABZR87_RS19215 at 675.623 kb on + strand, within ABZR87_RS19215 at 675.624 kb on - strand, within ABZR87_RS19215 at 675.830 kb on + strand at 675.830 kb on + strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.017 kb on - strand at 676.017 kb on - strand at 676.062 kb on + strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.081 kb on - strand at 676.081 kb on - strand at 676.081 kb on - strand at 676.207 kb on + strand, within ABZR87_RS19220 at 676.207 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.337 kb on + strand, within ABZR87_RS19220 at 676.337 kb on + strand, within ABZR87_RS19220 at 676.396 kb on + strand, within ABZR87_RS19220 at 676.402 kb on + strand, within ABZR87_RS19220 at 676.402 kb on + strand, within ABZR87_RS19220 at 676.528 kb on - strand at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.005 kb on - strand, within ABZR87_RS19225 at 677.005 kb on - strand, within ABZR87_RS19225 at 677.242 kb on + strand, within ABZR87_RS19225 at 677.466 kb on - strand at 677.466 kb on - strand at 677.466 kb on - strand at 677.466 kb on - strand at 677.600 kb on + strand, within ABZR87_RS19230 at 677.600 kb on + strand, within ABZR87_RS19230 at 677.601 kb on - strand, within ABZR87_RS19230 at 677.670 kb on - strand, within ABZR87_RS19230 at 677.670 kb on - strand, within ABZR87_RS19230 at 677.670 kb on - strand, within ABZR87_RS19230 at 677.673 kb on - strand, within ABZR87_RS19230 at 677.673 kb on - strand, within ABZR87_RS19230 at 677.706 kb on - strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.875 kb on - strand, within ABZR87_RS19230 at 678.040 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.407 kb on + strand, within ABZR87_RS19235 at 678.408 kb on - strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 675,623 + ABZR87_RS19215 0.89 -1.3 675,623 + ABZR87_RS19215 0.89 -0.9 675,624 - ABZR87_RS19215 0.89 -0.8 675,830 + -0.6 675,830 + -0.8 675,831 - -0.7 675,831 - -1.1 675,831 - -1.9 675,831 - +0.3 675,831 - -1.6 676,016 + +0.4 676,016 + -0.7 676,016 + +1.2 676,016 + -0.3 676,017 - -0.2 676,017 - -0.4 676,062 + -1.0 676,063 - -0.7 676,063 - +0.7 676,063 - -0.7 676,063 - -0.6 676,081 - +0.5 676,081 - +1.1 676,081 - +0.5 676,207 + ABZR87_RS19220 0.32 -0.9 676,207 + ABZR87_RS19220 0.32 -2.0 676,291 + ABZR87_RS19220 0.48 +0.3 676,291 + ABZR87_RS19220 0.48 -0.1 676,291 + ABZR87_RS19220 0.48 -0.2 676,291 + ABZR87_RS19220 0.48 -1.6 676,291 + ABZR87_RS19220 0.48 +0.0 676,291 + ABZR87_RS19220 0.48 -0.1 676,291 + ABZR87_RS19220 0.48 +1.3 676,292 - ABZR87_RS19220 0.48 +1.1 676,292 - ABZR87_RS19220 0.48 +1.2 676,292 - ABZR87_RS19220 0.48 -0.3 676,292 - ABZR87_RS19220 0.48 -2.4 676,292 - ABZR87_RS19220 0.48 -0.3 676,292 - ABZR87_RS19220 0.48 +0.7 676,292 - ABZR87_RS19220 0.48 -0.6 676,292 - ABZR87_RS19220 0.48 -1.2 676,292 - ABZR87_RS19220 0.48 -0.5 676,337 + ABZR87_RS19220 0.57 +0.3 676,337 + ABZR87_RS19220 0.57 -0.1 676,396 + ABZR87_RS19220 0.69 -0.4 676,402 + ABZR87_RS19220 0.70 +0.3 676,402 + ABZR87_RS19220 0.70 -0.1 676,528 - +0.7 676,753 + ABZR87_RS19225 0.17 +1.5 676,753 + ABZR87_RS19225 0.17 -0.1 676,753 + ABZR87_RS19225 0.17 -0.4 676,754 - ABZR87_RS19225 0.17 +0.1 676,754 - ABZR87_RS19225 0.17 -1.4 677,004 + ABZR87_RS19225 0.47 -0.1 677,004 + ABZR87_RS19225 0.47 -0.0 677,004 + ABZR87_RS19225 0.47 +1.0 677,004 + ABZR87_RS19225 0.47 -1.3 677,005 - ABZR87_RS19225 0.48 -1.3 677,005 - ABZR87_RS19225 0.48 -0.3 677,242 + ABZR87_RS19225 0.77 -0.3 677,466 - -0.3 677,466 - +0.3 677,466 - +1.2 677,466 - +1.2 677,600 + ABZR87_RS19230 0.33 -1.4 677,600 + ABZR87_RS19230 0.33 -1.2 677,601 - ABZR87_RS19230 0.33 -1.1 677,670 - ABZR87_RS19230 0.47 -0.2 677,670 - ABZR87_RS19230 0.47 +0.5 677,670 - ABZR87_RS19230 0.47 -0.9 677,673 - ABZR87_RS19230 0.47 -1.3 677,673 - ABZR87_RS19230 0.47 +0.0 677,706 - ABZR87_RS19230 0.54 -0.1 677,874 + ABZR87_RS19230 0.88 +0.2 677,874 + ABZR87_RS19230 0.88 -0.4 677,875 - ABZR87_RS19230 0.88 -1.0 678,040 + ABZR87_RS19235 0.14 +0.5 678,061 + ABZR87_RS19235 0.17 +0.3 678,061 + ABZR87_RS19235 0.17 -0.5 678,061 + ABZR87_RS19235 0.17 -0.2 678,062 - ABZR87_RS19235 0.17 -0.6 678,062 - ABZR87_RS19235 0.17 -0.4 678,062 - ABZR87_RS19235 0.17 +0.6 678,062 - ABZR87_RS19235 0.17 +0.6 678,082 - ABZR87_RS19235 0.19 -0.1 678,082 - ABZR87_RS19235 0.19 -0.9 678,407 + ABZR87_RS19235 0.63 -0.4 678,408 - ABZR87_RS19235 0.63 -2.3 678,422 + ABZR87_RS19235 0.65 -0.0 678,422 + ABZR87_RS19235 0.65 +0.6
Or see this region's nucleotide sequence