Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19210 and ABZR87_RS19215 are separated by 713 nucleotides ABZR87_RS19215 and ABZR87_RS19220 are separated by 122 nucleotides ABZR87_RS19220 and ABZR87_RS19225 are separated by 66 nucleotides
ABZR87_RS19210: ABZR87_RS19210 - glycoprotein, at 672,069 to 672,461
_RS19210
ABZR87_RS19215: ABZR87_RS19215 - EAL domain-containing protein, at 673,175 to 675,925
_RS19215
ABZR87_RS19220: ABZR87_RS19220 - DUF6622 family protein, at 676,048 to 676,551
_RS19220
ABZR87_RS19225: ABZR87_RS19225 - TOBE domain-containing protein, at 676,618 to 677,430
_RS19225
Position (kb) 673
674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 672.625 kb on + strand at 672.625 kb on + strand at 672.626 kb on - strand at 672.649 kb on + strand at 672.649 kb on + strand at 672.649 kb on + strand at 672.657 kb on + strand at 672.658 kb on - strand at 672.658 kb on - strand at 672.658 kb on - strand at 672.670 kb on + strand at 672.670 kb on + strand at 672.670 kb on + strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.826 kb on + strand at 672.827 kb on - strand at 672.867 kb on + strand at 672.868 kb on - strand at 672.874 kb on + strand at 672.874 kb on + strand at 672.874 kb on + strand at 672.874 kb on + strand at 672.875 kb on - strand at 672.875 kb on - strand at 672.897 kb on + strand at 673.015 kb on + strand at 673.015 kb on + strand at 673.016 kb on - strand at 673.044 kb on + strand at 673.108 kb on + strand at 673.108 kb on + strand at 673.108 kb on + strand at 673.109 kb on - strand at 673.109 kb on - strand at 673.109 kb on - strand at 673.109 kb on - strand at 673.500 kb on + strand, within ABZR87_RS19215 at 673.501 kb on - strand, within ABZR87_RS19215 at 673.501 kb on - strand, within ABZR87_RS19215 at 673.541 kb on + strand, within ABZR87_RS19215 at 673.541 kb on + strand, within ABZR87_RS19215 at 673.773 kb on - strand, within ABZR87_RS19215 at 673.787 kb on + strand, within ABZR87_RS19215 at 673.788 kb on - strand, within ABZR87_RS19215 at 673.874 kb on + strand, within ABZR87_RS19215 at 673.875 kb on - strand, within ABZR87_RS19215 at 673.937 kb on + strand, within ABZR87_RS19215 at 673.937 kb on + strand, within ABZR87_RS19215 at 673.938 kb on - strand, within ABZR87_RS19215 at 673.938 kb on - strand, within ABZR87_RS19215 at 673.938 kb on - strand, within ABZR87_RS19215 at 674.090 kb on + strand, within ABZR87_RS19215 at 674.091 kb on - strand, within ABZR87_RS19215 at 674.091 kb on - strand, within ABZR87_RS19215 at 674.453 kb on + strand, within ABZR87_RS19215 at 674.564 kb on - strand, within ABZR87_RS19215 at 674.742 kb on + strand, within ABZR87_RS19215 at 674.963 kb on + strand, within ABZR87_RS19215 at 674.963 kb on + strand, within ABZR87_RS19215 at 674.963 kb on + strand, within ABZR87_RS19215 at 674.964 kb on - strand, within ABZR87_RS19215 at 674.964 kb on - strand, within ABZR87_RS19215 at 674.964 kb on - strand, within ABZR87_RS19215 at 674.994 kb on - strand, within ABZR87_RS19215 at 675.050 kb on + strand, within ABZR87_RS19215 at 675.090 kb on - strand, within ABZR87_RS19215 at 675.125 kb on + strand, within ABZR87_RS19215 at 675.125 kb on + strand, within ABZR87_RS19215 at 675.125 kb on + strand, within ABZR87_RS19215 at 675.125 kb on + strand, within ABZR87_RS19215 at 675.126 kb on - strand, within ABZR87_RS19215 at 675.126 kb on - strand, within ABZR87_RS19215 at 675.182 kb on + strand, within ABZR87_RS19215 at 675.183 kb on - strand, within ABZR87_RS19215 at 675.194 kb on + strand, within ABZR87_RS19215 at 675.195 kb on - strand, within ABZR87_RS19215 at 675.195 kb on - strand, within ABZR87_RS19215 at 675.369 kb on - strand, within ABZR87_RS19215 at 675.608 kb on + strand, within ABZR87_RS19215 at 675.623 kb on + strand, within ABZR87_RS19215 at 675.623 kb on + strand, within ABZR87_RS19215 at 675.624 kb on - strand, within ABZR87_RS19215 at 675.830 kb on + strand at 675.830 kb on + strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.017 kb on - strand at 676.017 kb on - strand at 676.062 kb on + strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.081 kb on - strand at 676.081 kb on - strand at 676.081 kb on - strand at 676.207 kb on + strand, within ABZR87_RS19220 at 676.207 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.337 kb on + strand, within ABZR87_RS19220 at 676.337 kb on + strand, within ABZR87_RS19220 at 676.396 kb on + strand, within ABZR87_RS19220 at 676.402 kb on + strand, within ABZR87_RS19220 at 676.402 kb on + strand, within ABZR87_RS19220 at 676.528 kb on - strand at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 672,625 + +0.3 672,625 + -1.2 672,626 - +0.0 672,649 + -2.0 672,649 + -2.5 672,649 + +1.0 672,657 + -0.1 672,658 - +0.1 672,658 - +0.3 672,658 - +0.2 672,670 + -0.6 672,670 + +0.1 672,670 + -0.4 672,671 - +0.6 672,671 - -0.8 672,671 - +0.8 672,671 - -0.4 672,671 - -2.4 672,671 - -0.6 672,671 - +1.8 672,826 + -0.1 672,827 - -0.2 672,867 + -0.4 672,868 - +1.0 672,874 + +0.8 672,874 + -0.5 672,874 + +0.6 672,874 + +0.4 672,875 - +0.8 672,875 - +1.0 672,897 + -0.9 673,015 + +1.0 673,015 + +1.8 673,016 - +1.4 673,044 + +0.2 673,108 + +0.6 673,108 + +0.3 673,108 + +0.9 673,109 - -1.7 673,109 - -0.9 673,109 - -0.6 673,109 - -0.0 673,500 + ABZR87_RS19215 0.12 -0.4 673,501 - ABZR87_RS19215 0.12 -0.9 673,501 - ABZR87_RS19215 0.12 +0.3 673,541 + ABZR87_RS19215 0.13 -0.6 673,541 + ABZR87_RS19215 0.13 +1.6 673,773 - ABZR87_RS19215 0.22 +0.4 673,787 + ABZR87_RS19215 0.22 -0.9 673,788 - ABZR87_RS19215 0.22 -2.1 673,874 + ABZR87_RS19215 0.25 +0.1 673,875 - ABZR87_RS19215 0.25 -2.1 673,937 + ABZR87_RS19215 0.28 +0.6 673,937 + ABZR87_RS19215 0.28 -1.6 673,938 - ABZR87_RS19215 0.28 +0.1 673,938 - ABZR87_RS19215 0.28 +0.3 673,938 - ABZR87_RS19215 0.28 +1.0 674,090 + ABZR87_RS19215 0.33 -1.3 674,091 - ABZR87_RS19215 0.33 -0.1 674,091 - ABZR87_RS19215 0.33 +0.4 674,453 + ABZR87_RS19215 0.46 +0.1 674,564 - ABZR87_RS19215 0.50 -0.4 674,742 + ABZR87_RS19215 0.57 -0.4 674,963 + ABZR87_RS19215 0.65 -1.0 674,963 + ABZR87_RS19215 0.65 -0.8 674,963 + ABZR87_RS19215 0.65 -1.4 674,964 - ABZR87_RS19215 0.65 +0.6 674,964 - ABZR87_RS19215 0.65 +0.6 674,964 - ABZR87_RS19215 0.65 -0.6 674,994 - ABZR87_RS19215 0.66 +1.8 675,050 + ABZR87_RS19215 0.68 -0.6 675,090 - ABZR87_RS19215 0.70 -2.4 675,125 + ABZR87_RS19215 0.71 -2.8 675,125 + ABZR87_RS19215 0.71 -0.9 675,125 + ABZR87_RS19215 0.71 -0.0 675,125 + ABZR87_RS19215 0.71 -1.2 675,126 - ABZR87_RS19215 0.71 -1.4 675,126 - ABZR87_RS19215 0.71 -0.9 675,182 + ABZR87_RS19215 0.73 -1.3 675,183 - ABZR87_RS19215 0.73 -1.0 675,194 + ABZR87_RS19215 0.73 -0.4 675,195 - ABZR87_RS19215 0.73 -1.0 675,195 - ABZR87_RS19215 0.73 -1.3 675,369 - ABZR87_RS19215 0.80 -0.5 675,608 + ABZR87_RS19215 0.88 -2.5 675,623 + ABZR87_RS19215 0.89 -1.3 675,623 + ABZR87_RS19215 0.89 -0.9 675,624 - ABZR87_RS19215 0.89 -0.8 675,830 + -0.6 675,830 + -0.8 675,831 - -0.7 675,831 - -1.1 675,831 - -1.9 675,831 - +0.3 675,831 - -1.6 676,016 + +0.4 676,016 + -0.7 676,016 + +1.2 676,016 + -0.3 676,017 - -0.2 676,017 - -0.4 676,062 + -1.0 676,063 - -0.7 676,063 - +0.7 676,063 - -0.7 676,063 - -0.6 676,081 - +0.5 676,081 - +1.1 676,081 - +0.5 676,207 + ABZR87_RS19220 0.32 -0.9 676,207 + ABZR87_RS19220 0.32 -2.0 676,291 + ABZR87_RS19220 0.48 +0.3 676,291 + ABZR87_RS19220 0.48 -0.1 676,291 + ABZR87_RS19220 0.48 -0.2 676,291 + ABZR87_RS19220 0.48 -1.6 676,291 + ABZR87_RS19220 0.48 +0.0 676,291 + ABZR87_RS19220 0.48 -0.1 676,291 + ABZR87_RS19220 0.48 +1.3 676,292 - ABZR87_RS19220 0.48 +1.1 676,292 - ABZR87_RS19220 0.48 +1.2 676,292 - ABZR87_RS19220 0.48 -0.3 676,292 - ABZR87_RS19220 0.48 -2.4 676,292 - ABZR87_RS19220 0.48 -0.3 676,292 - ABZR87_RS19220 0.48 +0.7 676,292 - ABZR87_RS19220 0.48 -0.6 676,292 - ABZR87_RS19220 0.48 -1.2 676,292 - ABZR87_RS19220 0.48 -0.5 676,337 + ABZR87_RS19220 0.57 +0.3 676,337 + ABZR87_RS19220 0.57 -0.1 676,396 + ABZR87_RS19220 0.69 -0.4 676,402 + ABZR87_RS19220 0.70 +0.3 676,402 + ABZR87_RS19220 0.70 -0.1 676,528 - +0.7 676,753 + ABZR87_RS19225 0.17 +1.5 676,753 + ABZR87_RS19225 0.17 -0.1 676,753 + ABZR87_RS19225 0.17 -0.4 676,754 - ABZR87_RS19225 0.17 +0.1 676,754 - ABZR87_RS19225 0.17 -1.4
Or see this region's nucleotide sequence