Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18910

Experiment: Ra1_0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS18905 and ABZR87_RS18910 are separated by 240 nucleotidesABZR87_RS18910 and ABZR87_RS18915 overlap by 4 nucleotides ABZR87_RS18905: ABZR87_RS18905 - phage late control D family protein, at 598,954 to 600,012 _RS18905 ABZR87_RS18910: ABZR87_RS18910 - DUF2239 family protein, at 600,253 to 600,867 _RS18910 ABZR87_RS18915: ABZR87_RS18915 - MATE family efflux transporter, at 600,864 to 602,231 _RS18915 Position (kb) 600 601Strain fitness (log2 ratio) -2 -1 0 1 2at 599.306 kb on + strand, within ABZR87_RS18905at 599.306 kb on + strand, within ABZR87_RS18905at 599.325 kb on + strand, within ABZR87_RS18905at 599.326 kb on - strand, within ABZR87_RS18905at 599.391 kb on - strand, within ABZR87_RS18905at 599.391 kb on - strand, within ABZR87_RS18905at 599.616 kb on - strand, within ABZR87_RS18905at 599.616 kb on - strand, within ABZR87_RS18905at 599.616 kb on - strand, within ABZR87_RS18905at 599.621 kb on + strand, within ABZR87_RS18905at 599.676 kb on + strand, within ABZR87_RS18905at 599.677 kb on - strand, within ABZR87_RS18905at 599.834 kb on + strand, within ABZR87_RS18905at 599.835 kb on - strand, within ABZR87_RS18905at 599.971 kb on + strandat 599.972 kb on - strandat 600.027 kb on + strandat 600.028 kb on - strandat 600.028 kb on - strandat 600.126 kb on + strandat 600.126 kb on + strandat 600.126 kb on + strandat 600.127 kb on - strandat 600.127 kb on - strandat 600.154 kb on - strandat 600.154 kb on - strandat 600.157 kb on + strandat 600.157 kb on + strandat 600.157 kb on + strandat 600.157 kb on + strandat 600.157 kb on + strandat 600.157 kb on + strandat 600.157 kb on + strandat 600.157 kb on + strandat 600.158 kb on - strandat 600.158 kb on - strandat 600.158 kb on - strandat 600.158 kb on - strandat 600.158 kb on - strandat 600.164 kb on + strandat 600.165 kb on - strandat 600.165 kb on - strandat 600.200 kb on + strandat 600.200 kb on + strandat 600.200 kb on + strandat 600.200 kb on + strandat 600.201 kb on - strandat 600.201 kb on - strandat 600.201 kb on - strandat 600.235 kb on + strandat 600.236 kb on - strandat 600.236 kb on - strandat 600.361 kb on + strand, within ABZR87_RS18910at 600.688 kb on + strand, within ABZR87_RS18910at 600.972 kb on + strandat 600.972 kb on + strandat 600.972 kb on + strandat 600.972 kb on + strandat 600.972 kb on + strandat 600.972 kb on + strandat 600.972 kb on + strandat 600.973 kb on - strandat 600.973 kb on - strandat 600.973 kb on - strandat 600.973 kb on - strandat 600.973 kb on - strandat 600.973 kb on - strandat 601.260 kb on + strand, within ABZR87_RS18915at 601.261 kb on - strand, within ABZR87_RS18915at 601.261 kb on - strand, within ABZR87_RS18915at 601.265 kb on + strand, within ABZR87_RS18915at 601.266 kb on - strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.302 kb on + strand, within ABZR87_RS18915at 601.303 kb on - strand, within ABZR87_RS18915at 601.695 kb on + strand, within ABZR87_RS18915at 601.722 kb on + strand, within ABZR87_RS18915at 601.722 kb on + strand, within ABZR87_RS18915at 601.723 kb on - strand, within ABZR87_RS18915at 601.723 kb on - strand, within ABZR87_RS18915at 601.723 kb on - strand, within ABZR87_RS18915at 601.796 kb on + strand, within ABZR87_RS18915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
remove
599,306 + ABZR87_RS18905 0.33 +0.4
599,306 + ABZR87_RS18905 0.33 -1.1
599,325 + ABZR87_RS18905 0.35 -0.5
599,326 - ABZR87_RS18905 0.35 +0.1
599,391 - ABZR87_RS18905 0.41 +0.1
599,391 - ABZR87_RS18905 0.41 -0.1
599,616 - ABZR87_RS18905 0.63 -0.6
599,616 - ABZR87_RS18905 0.63 +0.1
599,616 - ABZR87_RS18905 0.63 -0.9
599,621 + ABZR87_RS18905 0.63 -0.4
599,676 + ABZR87_RS18905 0.68 -0.4
599,677 - ABZR87_RS18905 0.68 +1.2
599,834 + ABZR87_RS18905 0.83 -0.4
599,835 - ABZR87_RS18905 0.83 -0.7
599,971 + +0.3
599,972 - -1.1
600,027 + -0.2
600,028 - +0.8
600,028 - +1.0
600,126 + -0.7
600,126 + +0.4
600,126 + -0.4
600,127 - +0.2
600,127 - -0.4
600,154 - +0.1
600,154 - +1.2
600,157 + +0.2
600,157 + +0.2
600,157 + -0.9
600,157 + +0.2
600,157 + +0.2
600,157 + +0.6
600,157 + -0.0
600,157 + -1.0
600,158 - +0.8
600,158 - +0.2
600,158 - -0.5
600,158 - +0.0
600,158 - +0.0
600,164 + +0.5
600,165 - -0.7
600,165 - -0.0
600,200 + -0.5
600,200 + +1.7
600,200 + +0.6
600,200 + -0.3
600,201 - +0.4
600,201 - -0.7
600,201 - -0.3
600,235 + -0.0
600,236 - -0.4
600,236 - +0.9
600,361 + ABZR87_RS18910 0.18 +0.4
600,688 + ABZR87_RS18910 0.71 -1.2
600,972 + +1.3
600,972 + -0.5
600,972 + +0.2
600,972 + +1.1
600,972 + -0.6
600,972 + +0.3
600,972 + +0.4
600,973 - -0.8
600,973 - +0.3
600,973 - +0.1
600,973 - -0.4
600,973 - +0.1
600,973 - -2.4
601,260 + ABZR87_RS18915 0.29 -0.7
601,261 - ABZR87_RS18915 0.29 +0.3
601,261 - ABZR87_RS18915 0.29 +1.0
601,265 + ABZR87_RS18915 0.29 -0.1
601,266 - ABZR87_RS18915 0.29 -0.1
601,278 + ABZR87_RS18915 0.30 +0.5
601,278 + ABZR87_RS18915 0.30 -0.9
601,278 + ABZR87_RS18915 0.30 -0.6
601,278 + ABZR87_RS18915 0.30 +1.3
601,278 + ABZR87_RS18915 0.30 +1.3
601,278 + ABZR87_RS18915 0.30 +0.6
601,278 + ABZR87_RS18915 0.30 +1.0
601,278 + ABZR87_RS18915 0.30 -1.7
601,278 + ABZR87_RS18915 0.30 +1.9
601,279 - ABZR87_RS18915 0.30 -1.3
601,279 - ABZR87_RS18915 0.30 +1.6
601,279 - ABZR87_RS18915 0.30 -0.9
601,279 - ABZR87_RS18915 0.30 +0.0
601,279 - ABZR87_RS18915 0.30 -0.2
601,302 + ABZR87_RS18915 0.32 +0.2
601,303 - ABZR87_RS18915 0.32 -0.4
601,695 + ABZR87_RS18915 0.61 +1.0
601,722 + ABZR87_RS18915 0.63 +0.3
601,722 + ABZR87_RS18915 0.63 -1.2
601,723 - ABZR87_RS18915 0.63 -0.3
601,723 - ABZR87_RS18915 0.63 +0.1
601,723 - ABZR87_RS18915 0.63 -0.1
601,796 + ABZR87_RS18915 0.68 -0.6

Or see this region's nucleotide sequence